Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a15
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 140 2e-34
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 130 1e-31
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 114 1e-26
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 108 9e-25
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 105 5e-24
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 82 9e-17
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 82 9e-17
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 82 9e-17
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 80 4e-16
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 80 4e-16
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 79 8e-16
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 74 2e-14
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 72 9e-14
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 71 2e-13
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 70 4e-13
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 66 4e-12
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 64 2e-11
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 59 7e-10
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 54 2e-08
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 51 1e-07
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 34 0.018
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 27 2.0
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.7
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 3.5
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 4.7
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 25 8.1
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 140 bits (338), Expect = 2e-34
Identities = 91/254 (35%), Positives = 132/254 (51%), Gaps = 36/254 (14%)
Frame = +2
Query: 35 LATMDNYKLQLQKFFDQ-APDN-DDPNFEHQTP-------NLLAHQKKGIQWMINRE--K 181
+ T N + L K F+ DN D + + Q+ LL HQ +G+ W+ +RE
Sbjct: 192 ILTSQNTQAMLHKLFENNVLDNVKDDSMQRQSSFIPGMHIRLLDHQVQGLTWLKSRETVS 251
Query: 182 NGRPNGGVLADDMGLGKTLSVLMLIA------KNNSVQLKTLIVCPLSLINHWVTE---- 331
+GG+LADDMGLGKT+ ++ LI K +S++ TL+V PLSLI W +E
Sbjct: 252 KSSASGGILADDMGLGKTIQMIALILSHPLPKKKHSIK-STLVVAPLSLIKQWESEVQTK 310
Query: 332 NKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIK---------------QN 466
+K + ++ YK L Y +V+TTY +L++ + +
Sbjct: 311 SKLTAIVYHGASRYKLLKV--IHEYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEK 368
Query: 467 KHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMIN 646
K SLF+ W R++LDEAH IKN + A CAL NRWC+TGTP+ N ++YS++
Sbjct: 369 KKPSLFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVK 428
Query: 647 FLQCRPFNDPRVWK 688
FL PFND VWK
Sbjct: 429 FLHINPFNDQSVWK 442
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 130 bits (315), Expect = 1e-31
Identities = 84/259 (32%), Positives = 132/259 (50%), Gaps = 30/259 (11%)
Frame = +2
Query: 17 IEENSRLATMDNYKLQLQKFFDQAPDN--DDPNFEHQTP-----NLLAHQKKGIQWMINR 175
+ +++ D+ + QL++ F + +DP TP L+ HQK+G+ W+
Sbjct: 345 LSDSNNQKVQDDQQQQLEELFKDLDEQLVNDPTIREGTPAGLIPTLMEHQKEGLMWLKRL 404
Query: 176 EKNGRPNGGVLADDMGLGKTLSVLMLIAKN--NSVQLKT-LIVCPLSLINHWVTE----- 331
E++ + GG+LADDMGLGKT+ L L+ S +KT LI+ P+SL+ W E
Sbjct: 405 EESSK-KGGILADDMGLGKTVQALALLVTRPPESKSVKTTLIITPVSLLQQWHNEILTKI 463
Query: 332 --NKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKL-------------IKQN 466
+ + + + K A+ Y IV+TTY+V+ FK IK+
Sbjct: 464 APSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKF 523
Query: 467 KHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMIN 646
+H F W+RV+LDEA IKN T C L +T RWC++GTP+ N + YS+I
Sbjct: 524 EHLPFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIK 583
Query: 647 FLQCRPFNDPRVWKMLNKN 703
FL+ +P++D W +K+
Sbjct: 584 FLRIKPYSD---WSSFSKD 599
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 114 bits (274), Expect = 1e-26
Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 21/213 (9%)
Frame = +2
Query: 128 NLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSV--LMLIAKNNSVQLKT-LIVC 298
+LL HQ +G WM + E++ + GGV+ADDMGLGKT+ L+L K+ KT LIV
Sbjct: 249 SLLPHQVEGHAWMESMEQSSKC-GGVMADDMGLGKTIQTIALLLTQKSQDPLRKTNLIVV 307
Query: 299 PLSLINHWVTE--NKKH-NLNFNILKYYKSL--NADTFE--HYHIVVTTYDVLLAHFK-- 451
++L++ W E K H + ++ ++ S N D++E Y +V+TTY +L K
Sbjct: 308 SVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYEMKQN 367
Query: 452 -LIKQNKHS--------SLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGT 604
N + SL T W+R+VLDEAH I+N T L A RWC++GT
Sbjct: 368 DAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGT 427
Query: 605 PIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKN 703
PI N + YS++ FL+ +P+ VW + K+
Sbjct: 428 PIQNHIDEFYSLLKFLRIKPY---CVWSLFAKD 457
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 108 bits (259), Expect = 9e-25
Identities = 73/193 (37%), Positives = 105/193 (54%), Gaps = 29/193 (15%)
Frame = +2
Query: 197 GGVLADDMGLGKTLSVLMLIA--------------KNNSVQLK-----TLIVCPLSLINH 319
GG+LAD+MGLGKT+ VL LI +++ L TL+V P+SL++
Sbjct: 524 GGILADEMGLGKTIEVLSLIHSRPCFSTDEIPEAFRHSKPSLPVASRTTLVVAPMSLLDQ 583
Query: 320 WVTENKK--HNLNFNILKYY--------KSLNADTFEHYHIVVTTYDVLLAHFKLIKQNK 469
W +E K F + YY KS DT I++T+Y VLL+ F +Q+
Sbjct: 584 WHSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFS--QQSH 641
Query: 470 HSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINF 649
S LFS W RVVLDE H I+N ++ A ++++ NRW ITGTPI NK D+YS+I F
Sbjct: 642 SSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKF 701
Query: 650 LQCRPFNDPRVWK 688
++ P+ + W+
Sbjct: 702 MRYEPWCNYTYWQ 714
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 105 bits (253), Expect = 5e-24
Identities = 59/193 (30%), Positives = 105/193 (54%), Gaps = 13/193 (6%)
Frame = +2
Query: 128 NLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKTLIVCPLS 307
NLL Q++G+ W+ R+++ GG+LAD+MG+GKT+ + L+ + TL+V P+
Sbjct: 356 NLLPFQREGVYWL-KRQEDSSFGGGILADEMGMGKTIQTIALLLSEPRGK-PTLVVAPVV 413
Query: 308 LINHWVTENKKH-NLNFNILKYY---KSLNADTFEHYHIVVTTYDVLLAHFKLIKQN--- 466
I W E H N + YY + ++ + Y +V+T+Y+V+ + ++ +
Sbjct: 414 AIMQWKEEIDTHTNKALSTYLYYGQARDISGEELSSYDVVLTSYNVIESVYRKERSGFRR 473
Query: 467 -----KHSSLFSTC-WHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWD 628
K SL ++R++LDEAH IK+ A C L T + C++GTP+ N+ +
Sbjct: 474 KNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGE 533
Query: 629 MYSMINFLQCRPF 667
++S++ FL+ PF
Sbjct: 534 LFSLLRFLRADPF 546
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 81.8 bits (193), Expect = 9e-17
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLS----VLMLIAKNNSVQLKTLIVCPLS 307
+Q KG++WM++ N G+LAD+MGLGKT+ + LI K N Q LI+ PLS
Sbjct: 872 YQLKGLEWMLSLYNNNL--NGILADEMGLGKTIQTIAFITYLIEKKNQ-QGPFLIIVPLS 928
Query: 308 LINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFS 487
+ +W+ E +K + + Y I + ++VLL F+ I +++ L
Sbjct: 929 TLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRSSNFNVLLTTFEYIIKDR-PLLSR 987
Query: 488 TCWHRVVLDEAHIIKNCKTGVHNAACALTATN-RWCITGTPIHNKHWDMYSMINFLQCRP 664
W +++DE H IKN ++ + + + R +TGTP+ N ++++++NF+ +
Sbjct: 988 IKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKI 1047
Query: 665 FN 670
FN
Sbjct: 1048 FN 1049
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 81.8 bits (193), Expect = 9e-17
Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 4/185 (2%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA--KNNSVQLKTLIVCPL 304
L ++Q G+ W+ K G+LAD+MGLGKT V+ +A K +Q + L+V P
Sbjct: 414 LKSYQIVGLNWLCLMYK--AKLSGILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPS 471
Query: 305 SLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLI--KQNKHSS 478
S + +W+ E +K + + Y + + + Y+++ T +DVL+ ++L ++ S
Sbjct: 472 STLGNWLREFEKFCPSLRVESYSGTQSERINKRYYLMDTDFDVLVTTYQLASGSRDDRSF 531
Query: 479 LFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQC 658
L + + DE H +KN + + + A R ITGTP+ N ++ S++ F+
Sbjct: 532 LRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKELISLLAFMLP 591
Query: 659 RPFND 673
+ F++
Sbjct: 592 KVFDN 596
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 81.8 bits (193), Expect = 9e-17
Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKT---LIVCP 301
L +Q+ G++W+ + G+LAD+MGLGKT+ + L+A + LI+ P
Sbjct: 447 LREYQQYGLEWLTALHDSN--TNGILADEMGLGKTIQTIALLAHLACEKENWGPHLIIVP 504
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYH-IVVTTYDVLLAHFKLIKQNKHSS 478
S++ +W E KK F IL YY + + T+ V + ++L+ Q+ H
Sbjct: 505 TSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQD-HQP 563
Query: 479 LFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
W ++LDEAH IKN ++ + A +R +TGTP+ N +++S++ FL
Sbjct: 564 FRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFL 621
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 79.8 bits (188), Expect = 4e-16
Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 4/184 (2%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCP 301
L +Q +G+QWMI+ N G+LAD+MGLGKT+ + LI + L++ P
Sbjct: 417 LKEYQLRGLQWMISLYNNHL--NGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVP 474
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSL 481
LS + +W E ++ + + Y H + + + VLL ++ I +++ L
Sbjct: 475 LSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYIIKDR-PLL 533
Query: 482 FSTCWHRVVLDEAHIIKNCKTGVHNAACALTATN-RWCITGTPIHNKHWDMYSMINFLQC 658
W +++DE H +KN ++ + N ++ R +TGTP+ N ++++++NF+
Sbjct: 534 SRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLP 593
Query: 659 RPFN 670
R FN
Sbjct: 594 RIFN 597
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 79.8 bits (188), Expect = 4e-16
Identities = 51/192 (26%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKT---LSVLMLIAKNNSVQLKTLIVCP 301
L +Q KG+ W+ N + G G+LAD+MGLGKT +SV+ +A+ +++ L++ P
Sbjct: 842 LKEYQLKGLNWLANLYEQGI--NGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAP 899
Query: 302 LSLINHWVTENKKHNLNFNILKYY---------------KSLNADTFEHYHIVVTTYDVL 436
S +++W E + + Y+ K++ D +H+VVT+Y ++
Sbjct: 900 ASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLV 959
Query: 437 LAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHN 616
+ + + K W ++LDEA IK+ + + A NR +TGTPI N
Sbjct: 960 VLDAQYFQSVK--------WQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQN 1011
Query: 617 KHWDMYSMINFL 652
+++++++F+
Sbjct: 1012 TMQELWALLHFI 1023
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 78.6 bits (185), Expect = 8e-16
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Frame = +2
Query: 128 NLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLK-------- 283
+L +Q++G+ W+ K G+L DDMGLGKTL + ++A ++ + K
Sbjct: 1357 DLRKYQQEGVNWLAFLNKYELH--GILCDDMGLGKTLQTICIVASDHYNRQKLFEESGSP 1414
Query: 284 ------TLIVCPLSLINHWVTENKKHNLNFNILKYY-----KSLNADTFEHYHIVVTTYD 430
+LIVCP +L HW E + + Y ++ + +VVT+YD
Sbjct: 1415 KFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYD 1474
Query: 431 VLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPI 610
+ +N L W+ VLDE H+IKN + + A +L + +R ++GTPI
Sbjct: 1475 IC--------RNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPI 1526
Query: 611 HNKHWDMYSMINFL 652
N +++S+ +FL
Sbjct: 1527 QNNVLELWSLFDFL 1540
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 73.7 bits (173), Expect = 2e-14
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Frame = +2
Query: 143 QKKGIQWMINREKNGRPNGGVLADDMGLGKTLSV---LMLIAKNNSVQLKTLIVCPLSLI 313
Q GI WM R G+LAD+MGLGKT+ L + + LIV PLS +
Sbjct: 394 QLTGINWMAYLWH--RNENGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTV 451
Query: 314 NHWVTENKKHNLNFNILKYYKSLNADT-FEHYHIVVTT------YDVLLAHFKLIKQNKH 472
W + N + Y + + Y ++T +++LL ++ I ++K
Sbjct: 452 PAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQ 511
Query: 473 SSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
L + W + +DEAH +KN ++ ++ NR ITGTP+ N ++ S++NFL
Sbjct: 512 E-LNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFL 570
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 71.7 bits (168), Expect = 9e-14
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 39/216 (18%)
Frame = +2
Query: 182 NGRPNGGVLADDMGLGKTLSVLMLI-------------------AKNNSVQLKTLIVCPL 304
+G GG+LAD+MG+GKTL VL L+ KN TLI+ P
Sbjct: 280 SGDIRGGILADEMGMGKTLEVLGLVLHHQLPISLTDTCTFDQVVGKNVKYSKATLIITPS 339
Query: 305 SLINHWVTENKKHNLNFNILKYY---KS---LNADTFEHYHIVVTTYDVLL-------AH 445
++++ W++E H + + Y KS +A F IVVT+Y L +H
Sbjct: 340 TILDQWLSEIDLHVPSLKVFHYQGIRKSNGLKSAKIFLDCDIVVTSYSDLRFELLYTESH 399
Query: 446 FKLIKQNKH-----SSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPI 610
+ ++ K S L CW R+ +DEA +++ ++ V + N W ++GTP+
Sbjct: 400 SRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPV 459
Query: 611 HNKHWDMYSMINFLQCRP--FNDPRVWKMLNKNQRL 712
++ D++ ++ L+ P + W + + +R+
Sbjct: 460 RSEVDDLFGLLFLLRYSPMYLYKKQAWMQIIEKKRV 495
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 70.9 bits (166), Expect = 2e-13
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Frame = +2
Query: 143 QKKGIQWMINR-EKNGRPNGGVLADDMGLGKTLSV---LMLIAKNNSVQLKTLIVCPLSL 310
Q G+ WM KN G+LAD+MGLGKT+ L +A + L+V PLS
Sbjct: 379 QLTGVNWMAYLWHKN---ENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLST 435
Query: 311 INHWVTENKKHNLNFNILKYY-KSLNADTFEHYHIVVT-----TYDVLLAHFKLIKQNKH 472
+ W + N + Y + + Y V +++LL ++ + +++
Sbjct: 436 VPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDR- 494
Query: 473 SSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
S L + W + +DEAH +KN ++ ++ A +NR ITGTP+ N ++ ++++FL
Sbjct: 495 SVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFL 554
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 69.7 bits (163), Expect = 4e-13
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Frame = +2
Query: 83 QAPDNDD-PNFEHQTPNLLA-------HQKKGIQWMINREKNGRPNGGVLADDMGLGKTL 238
+A DN D P F + P LA +Q G+ W+ + + G+LAD+MGLGKT
Sbjct: 526 EAADNSDFPKFVTEQPKTLASDVQLKSYQLVGVNWLHLLYQ--QKLSGILADEMGLGKTC 583
Query: 239 SVLMLIAK--NNSVQLKTLIVCPLSLINHWVTENKKHNLNFNILKYYKSLN--ADTFEHY 406
V+ A L+V P S + +W+ E + + + YY S A+ E
Sbjct: 584 QVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQERANIREAI 643
Query: 407 HIVVTTYDVLLAHFKLIKQNKHSSLF--STCWHRVVLDEAHIIKNCKTGVHNAACALTAT 580
YD+L+ ++L NK F + V DE H +KN + + L A
Sbjct: 644 EENEIKYDILVTTYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNAN 703
Query: 581 NRWCITGTPIHNKHWDMYSMINFL 652
R +TGTP+ N ++ S++ F+
Sbjct: 704 FRLLLTGTPLQNNLKELVSLLAFI 727
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 66.5 bits (155), Expect = 4e-12
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Frame = +2
Query: 200 GVLADDMGLGKTLSVLMLIA--KNNSVQLKTLIVCPLSLINHWVTENKKHNLNFNILKYY 373
G+LAD+MGLGKT + + + ++ L++ P S + +W+ E K I YY
Sbjct: 408 GILADEMGLGKTCQTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAKFCPKLKIELYY 467
Query: 374 KSL--NADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLF--STCWHRVVLDEAHIIKNCK 541
S + E + +Y+V+L ++L +K LF + ++ V DE H +KN
Sbjct: 468 GSQVEREEIRERINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLKNRA 527
Query: 542 TGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
+ + ++ A R +TGTP+ N ++ S++ F+
Sbjct: 528 SERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFI 564
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 64.1 bits (149), Expect = 2e-11
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Frame = +2
Query: 128 NLLAHQKKGIQWMIN--REKNGRPN-GGVLADDMGLGKTLSVLMLI---------AKNNS 271
+L +HQ++G+ ++ + G+ +LAD+MGLGKTL + ++ A +S
Sbjct: 204 HLYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTLQTITVVWTLLKQSYYANRSS 263
Query: 272 VQLKTLIVCPLSLINHWVTENKKHN-LNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHF 448
++V P++L+ +W EN+ +N L + Y + A+ F+ + TY +++ +
Sbjct: 264 TINNAMVVAPVTLLKNW--ENEFYNWLGHERIHVYIARCAEDFQEF-TSNKTYSIIITGY 320
Query: 449 KLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWD 628
+ + + ++ DEAH +K+ + L R +TGTP+ N +
Sbjct: 321 ETVCTYLRNYGCGIDIDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSE 380
Query: 629 MYSMINFLQCRPFNDPRVWK 688
+SM+NF+ P +K
Sbjct: 381 YFSMVNFIIPGSLGTPNSFK 400
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 58.8 bits (136), Expect = 7e-10
Identities = 46/191 (24%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK--NNSVQLKTLIVCPL 304
L+ +Q KG+ W+ R P +LAD+MGLGKT+ V+ I+ L++ P
Sbjct: 556 LMPYQLKGLNWLYLRWYTHHPC--ILADEMGLGKTVQVISFISVLFYRHKCFPVLVIVPH 613
Query: 305 SLINHWVTENKKHN--LNFNILKYYKSLNADTFEHYHIV-------VTTYDVLLAHFKLI 457
+ + +W E KK L N+L + N Y ++ V+T+ ++++ +
Sbjct: 614 ATVANWERELKKWAPFLQINVLVGSEK-NRSLVRDYRLINQKDPKHVSTHVLVISASNV- 671
Query: 458 KQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYS 637
+ + S L W +++DE +KN ++ + ++ + + +TGTP+ N ++++
Sbjct: 672 -EREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNVRELFN 730
Query: 638 MINFLQCRPFN 670
++ FL N
Sbjct: 731 LLQFLNPMKIN 741
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 54.4 bits (125), Expect = 2e-08
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 20/193 (10%)
Frame = +2
Query: 131 LLAHQKKGIQWM---INREKNGRPNGGVLADDMGLGKTLSVLMLI--AKNNSVQL----- 280
L HQ +G++++ + + NG ++AD+MGLGKTL + L+ S Q
Sbjct: 264 LRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTI 323
Query: 281 -KTLIVCPLSLINHWVTENKK---------HNLNFNILKYYKSLNADTFEHYHIVVTTYD 430
K +I CP SL+ +W E K L+ K + + H T
Sbjct: 324 EKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRP 383
Query: 431 VLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPI 610
VL+A ++ ++ + L + ++ DE H +KN + A L R ++GTPI
Sbjct: 384 VLIASYETLR-SYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPI 442
Query: 611 HNKHWDMYSMINF 649
N + +S++NF
Sbjct: 443 QNDLSEYFSLLNF 455
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 125 PNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK---NNSVQLKTLIV 295
P+L +Q +QW+ E + GG++ D+MGLGKT+ ++ ++ + Q LIV
Sbjct: 275 PHLFRYQVTCVQWLW--ELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIV 332
Query: 296 CPLSLINHWVTE 331
CP +L+ WV E
Sbjct: 333 CPATLMKQWVNE 344
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/109 (27%), Positives = 52/109 (47%)
Frame = +2
Query: 326 TENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRV 505
T K + + +Y K+L F HI++TTY L + LI + W
Sbjct: 387 TSIKLRGASSSFHRYAKNLVESVFTRGHILITTYAGLRIYGDLILPRE--------WGYC 438
Query: 506 VLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
VLDE H I+N + + + + NR ++GTPI N +++++ +F+
Sbjct: 439 VLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFV 487
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 34.3 bits (75), Expect = 0.018
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 8/174 (4%)
Frame = +2
Query: 32 RLATMDNYKLQLQKFFDQAPDNDDPNFEHQTPNLLAHQKKGIQWMINREKNGRPNGGVLA 211
R A +D L+ F + + D P + + +Q+K + M NGR G++
Sbjct: 291 RCAEIDYPLLEEYDFRNDNINPDLPIDLKPSTQIRPYQEKSLSKMFG---NGRARSGIIV 347
Query: 212 DDMGLGKTLSVLMLIAKNNSVQLKTLIVCPLSLINHWVTENKKHNLNFNILK--YYKSLN 385
G GKT L+ I +++ +++C S+ V + ++ L ++ +K +
Sbjct: 348 LPCGAGKT---LVGITAACTIKKSVIVLCTSSVS---VMQWRQQFLQWSNIKPDHIAVFT 401
Query: 386 ADTFEHYH----IVVTTYDVL--LAHFKLIKQNKHSSLFSTCWHRVVLDEAHII 529
AD E +H +VV+TY ++ + Q L W ++LDE H++
Sbjct: 402 ADHKERFHSEAGVVVSTYSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVV 455
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 537 QFLIICASSKTTRCQQVENRL---ECLFCLINLKCANKTSYVVTT 412
Q + I S + RC ++ L EC+ ++N+ NK YVV T
Sbjct: 78 QEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVAT 122
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 422 TYDVLLAH--FKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGV 550
T + L++H F +I Q SS+ CWHR++ I+ + +
Sbjct: 201 TKNYLISHLIFWIIDQQSSSSI-EVCWHRIIPSVLRILNDLSPNI 244
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +2
Query: 260 KNNSVQLKTLIVCPLSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVV--TTYDV 433
+NN +L T + P +N W ++ K LN L Y L+ E+ +TY V
Sbjct: 696 ENNKPKLITQLFKPSWKVNVWGFKSDKVKLNIRTL-YASHLSMANLENLQCAACQSTYKV 754
Query: 434 LLAHFKLIKQNK 469
+ H + +K K
Sbjct: 755 EMHHVRQMKNLK 766
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 509 LDEAHIIKNCKTGVHNAACALTATNRWCIT 598
LDE II +CKT H A+ +WC++
Sbjct: 448 LDEQVIINSCKTFTHK---AMVFDVKWCVS 474
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 632 YSMINFLQCRPFNDPRVWKMLNKNQRLY 715
Y++ F++ F DP W ++ KN Y
Sbjct: 367 YNIHFFMKFAEFGDPYNWSVIRKNMHTY 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,724
Number of Sequences: 5004
Number of extensions: 65590
Number of successful extensions: 257
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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