Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a15
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 91 8e-19
SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_3329| Best HMM Match : SNF2_N (HMM E-Value=1.5e-07) 79 3e-15
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 5e-13
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32) 71 9e-13
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 68 7e-12
SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 59 3e-09
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42) 58 9e-09
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 54 2e-07
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74) 40 4e-06
SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17) 48 6e-06
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 44 1e-04
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 39 0.003
SB_16800| Best HMM Match : DUF1662 (HMM E-Value=0.095) 38 0.008
SB_24486| Best HMM Match : SNF2_N (HMM E-Value=0) 35 0.057
SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049) 33 0.17
SB_35886| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_33711| Best HMM Match : PSCyt1 (HMM E-Value=9) 31 0.93
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09) 30 2.1
SB_7211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_7773| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0024) 29 4.9
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_24833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 91.1 bits (216), Expect = 8e-19
Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 9/190 (4%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK--NNSVQLKTLIVCPL 304
L ++Q +G++W+ +NG G+LAD+MGLGKT+ + L++ V+ L+ PL
Sbjct: 813 LRSYQLEGVEWLKGLYENGV--NGILADEMGLGKTIQCIGLVSYLIEMGVRGPFLVAAPL 870
Query: 305 SLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIV-------VTTYDVLLAHFKLIKQ 463
S + +WV+E ++ + ++ Y+ S+ T I T V++ ++ I
Sbjct: 871 STLPNWVSEFRRFSPQIPVILYHGSIQERTSLRRKITKLKKAGPFETMPVVVTSYE-IAM 929
Query: 464 NKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMI 643
N LF W +++DE H IKN + + + NR +TGTP+ N +++S++
Sbjct: 930 NDQKHLFQLMWKHMIVDEGHRIKNLNCRLIRELKSYNSANRLLLTGTPLQNNLAELWSLL 989
Query: 644 NFLQCRPFND 673
NFL F+D
Sbjct: 990 NFLLPDIFDD 999
>SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 89.4 bits (212), Expect = 3e-18
Identities = 53/176 (30%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA--KN-NSVQLKTLIVCPLSL 310
+Q +G+ W+I+ +NG G+LAD+MGLGKTL + L+ KN +V +++CP S
Sbjct: 56 YQVRGLNWLISLYENGI--NGILADEMGLGKTLQTISLLGYMKNFRNVPGPHMVICPKST 113
Query: 311 INHWVTENKKHNLNFNILKYYKSLNADT-FEHYHIVVTTYDVLLAHFKLIKQNKHSSLFS 487
+ +W+ E ++ + + + T F ++ +DV + ++++ + K ++F
Sbjct: 114 LANWMAEFERWCPSIRAVCLIGNQEQRTAFIRDTMLPGEWDVCVTSYEMVIREK--AVFK 171
Query: 488 T-CWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
W +V+DEAH IKN K+ + L + NR +TGTP+ N ++++++NFL
Sbjct: 172 KFAWRYIVIDEAHRIKNEKSKLSEIVRELRSANRLLLTGTPLQNNLHELWALLNFL 227
>SB_3329| Best HMM Match : SNF2_N (HMM E-Value=1.5e-07)
Length = 200
Score = 79.4 bits (187), Expect = 3e-15
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Frame = +2
Query: 344 NLNFNILKYY---KSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRVVLD 514
++ N+ YY + + I++TTY + + F++ S L W R+VLD
Sbjct: 10 SVRLNVYMYYGGERIKEVKYLKKQDIILTTYPTIGSDFRM----NDSPLHKIKWLRIVLD 65
Query: 515 EAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKM 691
E H I+N T A L A RW +TGTPI N+ D++S++ FL+ PF+DP WK+
Sbjct: 66 EGHAIRNKNTVWTKAVLKLEAERRWVVTGTPIQNRIGDLWSIVRFLRLDPFSDPTWWKI 124
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 72.1 bits (169), Expect = 4e-13
Identities = 50/181 (27%), Positives = 94/181 (51%), Gaps = 2/181 (1%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLK--TLIVCPL 304
L +Q +G+ W++ N R N +LAD+MGLGKT+ + + + ++ L++ PL
Sbjct: 578 LREYQLEGVNWLMFCWCN-RQNS-ILADEMGLGKTIQSIAFLFEMQRYGIRGPNLVIAPL 635
Query: 305 SLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLF 484
S I++W E + N + N + Y+ S ++ H ++ Y+ +++ + L
Sbjct: 636 STISNWQREFESWN-DINAVVYHGSASS---RH---LIQEYEF---YYRDEHVADNMQLS 685
Query: 485 STCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRP 664
+ W V++DEAH +KN + L +R +TGTP+ N +++S++NFL+
Sbjct: 686 TVPWRAVIIDEAHRLKNRNCKLLEGLNNLQMEHRILLTGTPLQNNVEELFSLLNFLEPSQ 745
Query: 665 F 667
F
Sbjct: 746 F 746
>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 71.7 bits (168), Expect = 5e-13
Identities = 51/216 (23%), Positives = 104/216 (48%), Gaps = 14/216 (6%)
Frame = +2
Query: 47 DNYKLQLQKFFDQAPDNDDPNFEHQTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGL 226
DN ++F D DN+ L +Q+ G++W+ E + + GG++ D+MGL
Sbjct: 408 DNESSDEEEFSDMEFDNNYKVPGQIWHKLYKYQQTGVKWLW--ELHCQQAGGIIGDEMGL 465
Query: 227 GKTLSVLMLIA--KNNSVQLK----------TLIVCPLSLINHWVTENKKHNLNFNILKY 370
GKT+ ++ +A K + + + LIVCP+++++ WV E K F +
Sbjct: 466 GKTIQTVVFLAGLKYSGISARKSRRDQGLGPVLIVCPVTVLHQWVKEFHKWWPEFRVAVL 525
Query: 371 YK--SLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKT 544
+ S + + + V++ + ++ N+ +L + W V+LDE H I+N
Sbjct: 526 HDTGSFSGRRDALVRKICKAHGVIVTSYSGVRCNQ-DALLAQRWDYVILDEGHKIRNPDA 584
Query: 545 GVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
+ A + +R ++G+P+ N +++S+ +F+
Sbjct: 585 EITLACKQIRTPHRIILSGSPMQNNLRELWSLFDFV 620
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 70.9 bits (166), Expect = 9e-13
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLML---IAKNNSVQLKTLIVCP 301
L +Q G++WM++ N G+LAD+MGLGKT+ + L + + + L++ P
Sbjct: 275 LKEYQLAGLEWMVSLHNNNL--NGILADEMGLGKTIQTIALFSYLIEKKRLNGPFLVIVP 332
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSL 481
LS +++W E +K + ++ Y S N + ++V+L ++ + ++K + L
Sbjct: 333 LSTLSNWQLEFEKWAPSAIVVSYKGSPNMRRSAGAVLRTGKFNVVLTTYEYVMRDK-AIL 391
Query: 482 FSTCWHRVVLDEAHIIKN--CK-TGVHNAACALTATNRWCITGTPI 610
W +V+DE H +KN CK T V N A A +R +TGTP+
Sbjct: 392 AKVRWKYMVVDEGHRMKNHHCKLTQVLNTHYA--AQHRILLTGTPL 435
>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
Length = 884
Score = 70.9 bits (166), Expect = 9e-13
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLML---IAKNNSVQLKTLIVCP 301
L +Q G++WM++ N G+LAD+MGLGKT+ + L + + + L++ P
Sbjct: 706 LKEYQLAGLEWMVSLHNNNL--NGILADEMGLGKTIQTIALFSYLIEKKRLNGPFLVIVP 763
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSL 481
LS +++W E +K + ++ Y S N + ++V+L ++ + ++K + L
Sbjct: 764 LSTLSNWQLEFEKWAPSAIVVSYKGSPNMRRSAGAVLRTGKFNVVLTTYEYVMRDK-AIL 822
Query: 482 FSTCWHRVVLDEAHIIKN--CK-TGVHNAACALTATNRWCITGTPI 610
W +V+DE H +KN CK T V N A A +R +TGTP+
Sbjct: 823 AKVRWKYMVVDEGHRMKNHHCKLTQVLNTHYA--AQHRILLTGTPL 866
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 68.1 bits (159), Expect = 7e-12
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 4/190 (2%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK---NNSVQLKTLIVCP 301
L +Q G+ W++ + R NG +LAD+MGLGKT+ + L+A + L+V P
Sbjct: 784 LREYQLIGLDWLVTMHEK-RLNG-ILADEMGLGKTIQTISLLAHLACEKGIWGPHLVVVP 841
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEHY-HIVVTTYDVLLAHFKLIKQNKHSS 478
S++ +W E KK F IL YY + + + V + +KL+ Q+ H +
Sbjct: 842 TSVMLNWEMEFKKWLPGFKILTYYGNQKERKLKRQGWTKCNAFHVCITSYKLVVQD-HQA 900
Query: 479 LFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQC 658
W +LDE+ + + R +TGTP+ N +++S+++FL
Sbjct: 901 FRRKKWKYFILDESQRWQYLLN--------FNSQRRLLLTGTPLQNSLMELWSLMHFLMP 952
Query: 659 RPFNDPRVWK 688
F + +K
Sbjct: 953 HLFQSHKDFK 962
>SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 66.1 bits (154), Expect = 3e-11
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 4/207 (1%)
Frame = +2
Query: 104 PNFEHQTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK--NNSVQ 277
P+ + + L +Q G+ W+I + G G+LAD+MGLGKT+ + IA
Sbjct: 482 PDILNPSRQLKPYQLTGLNWLILMHEQGV--NGILADEMGLGKTVQAISFIAHLIEKGDD 539
Query: 278 LKTLIVCPLSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLI 457
LI+ P S ++ ++ ++ L IL D + +++TTY++ F+
Sbjct: 540 GPHLIIVPSSTLS---SQEERTYLREEIL--------DEHSDFKVIITTYNMATGGFE-- 586
Query: 458 KQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYS 637
S L H VV DE H++KN ++ + + A R +TGTP+ N ++ S
Sbjct: 587 ---DTSFLRQLRPHYVVFDEGHMLKNMQSQRYLKLTRIRAKRRLLLTGTPMQNDLLELMS 643
Query: 638 MINFLQCRPFNDPRV--WKMLNKNQRL 712
+++F+ F D R K+L N++L
Sbjct: 644 LLSFVMPTIF-DGRTDGLKLLFGNKKL 669
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 59.3 bits (137), Expect = 3e-09
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Frame = +2
Query: 89 PDNDDPNFE---HQTPNLLAHQKKGIQWM-------INREKNGRPNGG-VLADDMGLGKT 235
P+ +P E H L HQ KG+Q+M + K G P G +LA MGLGKT
Sbjct: 774 PETKEPIVEVNKHIVKYLKPHQCKGVQFMYDCLVESVKAYKKGEPGSGCILAHCMGLGKT 833
Query: 236 LSVLMLI---AKNNSVQLKT-LIVCPLSLINHWVTENKK-----HNLNFNILK---YYKS 379
L V+ L+ N ++ T L+V PL+ + +W E +K + +L+ +
Sbjct: 834 LQVVTLVHTLFNNKELEFTTALVVAPLNTLLNWQVEFEKWLSVDDRMEVYVLQEVGHNSW 893
Query: 380 LNADTFEHYH----IVVTTYDVL--LAHFKLIKQNKHSSLFSTCW-----HRVVLDEAHI 526
AD + I++ YD+ L+ ++ K +F V+ DE HI
Sbjct: 894 RRADMLTQWQRYGGIMIMGYDMYRNLSLCNNVRSKKVKKIFKETLVDPGPDIVICDEGHI 953
Query: 527 IKNCKTGVHNAACALTATNRWCITGTPIHN 616
+KN + + A A+ R +TGTP+ N
Sbjct: 954 LKNDASAISRALNAIKTRRRVVLTGTPLQN 983
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 57.6 bits (133), Expect = 9e-09
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTL---SVLMLIAKNNSVQLKTLIVCPLSL 310
+Q++G+ W+ R + +LAD+MGLGKT+ S L + K Q L+ PLS
Sbjct: 641 YQREGLNWL--RFSWAQGTNTILADEMGLGKTIQTISFLYSLMKEGHSQGPFLVSAPLST 698
Query: 311 INHW-------------VTENKKHNLNFNILKYYKSLNADTFEH----YHIVVTT---YD 430
+ +W VT I + S + D F+ Y + + +
Sbjct: 699 LVNWEREFEFWAPDMYVVTYAGDKESRATIRNFDFSFDEDAFKSGLKAYKLKKDSPVKFH 758
Query: 431 VLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPI 610
VLL ++L+ + +SL S W +V+DEAH +KN ++ + +TGTP+
Sbjct: 759 VLLTSYELVSIDS-ASLQSIDWAMLVVDEAHRLKNNQSKFFRTLSDYNIGYKLLLTGTPL 817
Query: 611 HNKHWDMYSMINFLQCRPFND 673
N ++++++ FL FN+
Sbjct: 818 QNNLEELWNLLFFLDPVEFNN 838
>SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42)
Length = 784
Score = 57.6 bits (133), Expect = 9e-09
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 29/214 (13%)
Frame = +2
Query: 95 NDDPNFEHQTP---NLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA-- 259
N+ P + P L +Q++G+Q++ ++ NG +L DDMGLGKT+ V+ L++
Sbjct: 127 NEHPVIQVPAPINCRLRDYQREGVQFLYQHYRSN--NGAILGDDMGLGKTVQVIALLSAI 184
Query: 260 ---------------------KNNSVQLKT---LIVCPLSLINHWVTENKKHNLNFNILK 367
K + V K LIVCP S++ +W E F +
Sbjct: 185 LGKTGTRADVFGKYIGQGPSGKQSEVSTKKGVFLIVCPGSMLYNWKDELDTWGY-FRVKM 243
Query: 368 YYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTG 547
Y+ S + DV+L + ++ N + W VV+DE H +K+
Sbjct: 244 YHGSSKEMVMDQ--AAKGKLDVVLTTYDTLRINV-TEFDCVNWLAVVMDEVHKLKDPSAK 300
Query: 548 VHNAACALTATNRWCITGTPIHNKHWDMYSMINF 649
AA L R+ +TGTP+ N+ +++ ++++
Sbjct: 301 NTKAAKRLKVQRRFGLTGTPLQNRWSELWCVLDW 334
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 53.6 bits (123), Expect = 2e-07
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 3/192 (1%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCPLSL 310
+Q G+ W+ N G +LAD+MGLGKT+ V+ ++ +S+ ++V PLS
Sbjct: 130 YQLDGLNWLANSWCKGYSI--ILADEMGLGKTIQVISFLSYLCHTHSLFGPFIVVVPLST 187
Query: 311 INHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFST 490
+ W E + + LN +VV D+ +NK L +
Sbjct: 188 MAAWQRE---------FVIWADQLN--------VVVYLGDIT-------SRNKQF-LGTI 222
Query: 491 CWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFN 670
W +V+DEAH +KN + ++ A +R +TGTP+ N +++++++FL F+
Sbjct: 223 NWAGLVVDEAHRLKNDDSLLYKALEEFHTNHRLLVTGTPLQNSLKELWALLHFLMPERFS 282
Query: 671 DPRVWKMLNKNQ 706
++ ++ Q
Sbjct: 283 SWEAFEQIHSTQ 294
>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
Length = 808
Score = 40.3 bits (90), Expect(2) = 4e-06
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +2
Query: 197 GGVLADDMGLGKTLSVLMLIAKNN 268
GG+LADDMGLGKTL+V+ LI N+
Sbjct: 705 GGILADDMGLGKTLTVISLIVTNH 728
Score = 27.9 bits (59), Expect(2) = 4e-06
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 62 QLQKFFDQAPDNDDPNFEHQTPNLLA----HQKKGIQWMINREKN 184
+L K F+ + D +L HQK+ + WMI RE++
Sbjct: 628 ELDKMFESLQEYDKDGIHEPASVILTKMFLHQKQALNWMITRERS 672
>SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)
Length = 549
Score = 48.4 bits (110), Expect = 6e-06
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Frame = +2
Query: 278 LKTLIVCPLSLINHWVTENKKHNLNFNILKYYKSLN--ADTFEHYHI--VVTTYDVLLAH 445
L +L++CP +L HWV E +K F I +Y K L+ E + V +++++A
Sbjct: 370 LPSLVICPPTLTGHWVYEVEK----FVIKEYLKPLHYTGPPMERQRLRNKVKNHNLIVAS 425
Query: 446 FKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKT 544
+ +++ N S W+ +LDE HIIKN KT
Sbjct: 426 YDIVR-NDGDFFKSIHWNYCILDEGHIIKNGKT 457
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/90 (24%), Positives = 47/90 (52%)
Frame = +2
Query: 404 YHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATN 583
+H+++T+Y +++ + ++ K W +VLDEA IK+ + N
Sbjct: 137 FHLLITSYQLVVQDVRYFQRIK--------WQYIVLDEAQAIKSSSSVRWKILLGYQCRN 188
Query: 584 RWCITGTPIHNKHWDMYSMINFLQCRPFND 673
R +TGTPI N +++++++F+ F++
Sbjct: 189 RLLLTGTPIQNSMAELWALLHFIMPTLFDN 218
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 200 GVLADDMGLGKTLSVLMLIA 259
G+LAD+MGLGKT+ + ++
Sbjct: 101 GILADEMGLGKTVQSIAFLS 120
>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 764
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 116 HQTPNLLAHQKKGIQWM---INREKNGRPNGGVLADDMGLGKTLSVLMLI 256
H +L HQ+ G+ ++ + +N NG +LAD+MGLGKTL + LI
Sbjct: 200 HLGQHLRPHQRDGVLFLYECVMGLRNFNGNGAILADEMGLGKTLQCIALI 249
>SB_16800| Best HMM Match : DUF1662 (HMM E-Value=0.095)
Length = 142
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 503 VVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINF 649
++LDE H IKN N A+ A + + +TGTPI N +M+++ +F
Sbjct: 3 IILDEGHKIKNVTKTSKNVR-AIPAKHHFILTGTPIQNNLREMWALFDF 50
>SB_24486| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 785
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 197 GGVLADDMGLGKTLSVLML--IAKNNSVQLKTLIVCPLSLINHWVTE 331
G +LA MGLGKTL V+ I ++ K L + P++ I +W++E
Sbjct: 288 GCILAHCMGLGKTLQVVAFVDIFLRHTTAKKVLCIVPINTIQNWLSE 334
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 503 VVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQ 655
V+ DE H IKN + + +A + R +TG P+ N + + M++F++
Sbjct: 462 VICDEGHRIKNNQANISHALKKIKTRRRVVLTGYPLQNNLVEYWCMVDFVR 512
>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
Length = 508
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = +2
Query: 128 NLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKTLIVCPLS 307
+L+ Q++G+ + I ++ GR ++ADDMGLGKT+ + +A + L+V P S
Sbjct: 406 SLMPFQREGVAFCICQD--GR---AIIADDMGLGKTVQAI-CVASFYRKEWPLLVVAPSS 459
Query: 308 LINHW 322
+ W
Sbjct: 460 MRLTW 464
>SB_35886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +2
Query: 284 TLIVCPLSLINHWVTENKKHNLNFNI-LKYYKS------LNADTFEHYHIVVTTYDVLLA 442
TLI+ P ++ + WV E ++H + L Y+ + + + IV+TTY L A
Sbjct: 408 TLIISPATISSQWVEEIQRHTAPGAVRLLVYEGVLKQGFIQPEVLGDHDIVLTTYATLRA 467
Query: 443 HFKLIKQNKHSSL 481
F + NK SL
Sbjct: 468 DFYHVGVNKGKSL 480
>SB_33711| Best HMM Match : PSCyt1 (HMM E-Value=9)
Length = 103
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTL 238
L +Q +G+ WM + G +G +L D+MGLGKT+
Sbjct: 69 LRPYQLEGVGWMRDCALTG--HGCILGDEMGLGKTI 102
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 269 SVQLKTLIVCPLSLINHWVTENKKHNLNFNILKYY 373
S++++ +I PL +I H + E + +NILKY+
Sbjct: 1266 SIRIRDIIGHPLFIIGHILEETSNRHTAYNILKYF 1300
>SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)
Length = 868
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSL 481
+S I + E N N + L+ D H++ T DV++ K++++N+ +L
Sbjct: 649 MSAIKQYFQEKPNLNQILNWCVFDCDLDDDEVRE-HVLDTLVDVVVLLMKVLRRNEFEAL 707
Query: 482 FSTCWH 499
FS +H
Sbjct: 708 FSRIYH 713
>SB_7211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 305 TEDTLLKFSIVQSCFLRLTLTQRAFYQ-VPCRRQ 207
T L ++ ++CF+ TLTQ FY PCR Q
Sbjct: 46 TRAILTVLTVFKTCFVPWTLTQVVFYACAPCRSQ 79
>SB_7773| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0024)
Length = 550
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 368 YYKSLNADTFEHYHIVVTTYDVLLAHFKL 454
Y+ LN D+ E +++ YD+L H++L
Sbjct: 468 YFALLNNDSIEVNDVLIVNYDLLQVHYRL 496
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 552 CTPVLQFLIICASSKTTRCQQVENRLE 472
CT V F ++C S TR QVE+ E
Sbjct: 190 CTKVGHFAVVCRSKPNTRVSQVEDAHE 216
>SB_24833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 519 RILSKTARRACTTPRAL*PQRTDGASPAHRSTT 617
RILS RACT +AL QR A A +TT
Sbjct: 17 RILSTIPTRACTFQKALPCQRGGNAGQAMNTTT 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,208,020
Number of Sequences: 59808
Number of extensions: 502976
Number of successful extensions: 1450
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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