Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a15
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 111 6e-25
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 111 6e-25
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 103 2e-22
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 102 2e-22
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 97 1e-20
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 93 1e-19
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 93 1e-19
At1g02670.1 68414.m00217 DNA repair protein, putative similar to... 93 2e-19
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 91 9e-19
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 87 8e-18
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 87 1e-17
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 85 3e-17
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 85 3e-17
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 85 4e-17
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 85 4e-17
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 85 4e-17
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 81 5e-16
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 81 5e-16
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 81 7e-16
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 79 2e-15
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 79 4e-15
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 78 5e-15
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 77 9e-15
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 77 1e-14
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 75 4e-14
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 74 1e-13
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 53 1e-13
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 73 2e-13
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 69 2e-12
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 69 2e-12
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 69 2e-12
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 69 3e-12
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 68 5e-12
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 67 9e-12
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 67 1e-11
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 57 1e-08
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica... 44 8e-05
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 43 2e-04
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 37 0.015
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 33 0.19
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 32 0.43
At5g41370.1 68418.m05027 DNA repair protein, putative / TFIIH ba... 29 2.3
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 29 2.3
At1g18410.1 68414.m02299 kinesin motor protein-related similar t... 29 3.1
At5g41360.1 68418.m05026 DNA repair protein and transcription fa... 29 4.0
At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to... 29 4.0
At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to... 29 4.0
At2g46520.1 68415.m05798 cellular apoptosis susceptibility prote... 27 9.3
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 111 bits (266), Expect = 6e-25
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Frame = +2
Query: 287 LIVCPLSLINHWVTENKKHNL--NFNILKYY---KSLNADTFEHYHIVVTTYDVLLAHFK 451
LIVCP++L+ W TE + H + ++ +Y + +A +V+TTY VL + F
Sbjct: 493 LIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFS 552
Query: 452 LIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDM 631
H +++ W R+VLDEAH IKN K+ + AA AL A RWC+TGTPI N D+
Sbjct: 553 QENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDL 612
Query: 632 YSMINFLQCRPFNDPRVWKML 694
YS++ FL+ P+ W L
Sbjct: 613 YSLLRFLRIEPWGTWAWWNKL 633
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 197 GGVLADDMGLGKTLSVLMLIAKNNSVQLKTLIVCP 301
GG+LAD MGLGKT+ + L+ ++ T +CP
Sbjct: 414 GGILADAMGLGKTVMTISLLLAHSWKAASTGFLCP 448
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 111 bits (266), Expect = 6e-25
Identities = 88/255 (34%), Positives = 123/255 (48%), Gaps = 39/255 (15%)
Frame = +2
Query: 20 EENSRLATMDNYKLQLQKFFDQAPDNDDPNFEHQTPNLLAHQKKGIQWMINREKNGRPN- 196
EE + + Y+ LQ + D P P L+ HQK + WM +EK R
Sbjct: 17 EEKTTVNERVIYQAALQDLKQPKTEKDLPPGVLTVP-LMRHQKIALNWMRKKEKRSRHCL 75
Query: 197 GGVLADDMGLGKTLSVLMLIA----KNNSVQLK--------TLIVCPLSLINHWVTENKK 340
GG+LADD GLGKT+S + LI K+ S Q K TLIVCP S++ W E K+
Sbjct: 76 GGILADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKE 135
Query: 341 -----HNLNFNILK-YYKSLNADTFEHYHIVVTTYDV---------LLAHFKLIKQNKH- 472
H L+ + +++ + Y +V+TTY + +L + ++ +
Sbjct: 136 KVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESL 195
Query: 473 --SSLFS--------TCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKH 622
SSL W RVVLDEAH IKN +T + A +L A RWC+TGTPI NK
Sbjct: 196 DGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKV 255
Query: 623 WDMYSMINFLQCRPF 667
D+YS FL+ P+
Sbjct: 256 DDLYSYFRFLRYHPY 270
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 103 bits (246), Expect = 2e-22
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 6/179 (3%)
Frame = +2
Query: 176 EKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKTLIVCPLSLINHWVTENKKHNLNF 355
EK G+ G + + K L ++ N S Q TLIVCP S+I+ W+T+ ++H +
Sbjct: 306 EKKGKKRGRGKSSESVTRKKLKTDDVVGMNVS-QKTTLIVCPPSVISAWITQLEEHTVP- 363
Query: 356 NILKYY------KSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRVVLDE 517
ILK Y ++ + + Y IV+TTY L + + S + W R++LDE
Sbjct: 364 GILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAVE----ESWEDSPVKKMEWLRIILDE 419
Query: 518 AHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKML 694
AH IKN C L A+ RW +TGTPI N +D+YS++ FL+ PF+ W+ L
Sbjct: 420 AHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSL 478
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 27/80 (33%)
Frame = +2
Query: 101 DPNFEHQTPNLLAHQKKGIQWMINREKNG------------------------RPN---G 199
+P E L AHQK+G+ W+++REK+G RP+ G
Sbjct: 202 EPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLRG 261
Query: 200 GVLADDMGLGKTLSVLMLIA 259
GV ADDMGLGKTL++L LIA
Sbjct: 262 GVFADDMGLGKTLTLLSLIA 281
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 102 bits (245), Expect = 2e-22
Identities = 66/189 (34%), Positives = 105/189 (55%), Gaps = 9/189 (4%)
Frame = +2
Query: 155 IQWMINREKNGRP-NGGVLADDMGLGKTLSVLMLIAKNNSVQLK--TLIVCPLSLINHWV 325
I ++ R G P N VL D+ K + +A +V+ K TLI+CP++L++ W
Sbjct: 698 IALILARPGRGNPENEDVLVADVNADKRNRKEIHMALT-TVKAKGGTLIICPMALLSQWK 756
Query: 326 TENKKHNL--NFNILKYY---KSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFST 490
E + H+ ++L YY ++ +A + +V+TTY VL + +K Q+ +S+F
Sbjct: 757 DELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYK---QDMANSIFHR 813
Query: 491 C-WHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPF 667
W+R+VLDEAH IK+ KT A L++ RWC+TGTP+ NK D+YS++ FL P+
Sbjct: 814 IDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPW 873
Query: 668 NDPRVWKML 694
+ W L
Sbjct: 874 CNWAWWSKL 882
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 197 GGVLADDMGLGKTLSVLMLI 256
GG+LAD MGLGKT+ + LI
Sbjct: 682 GGILADAMGLGKTVMTIALI 701
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 96.7 bits (230), Expect = 1e-20
Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 13/186 (6%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK--NNSVQLKTLIVCPL 304
L HQ++G+ W+ + G+ GG+L DDMGLGKT+ + +A ++ + + L+V P
Sbjct: 377 LYPHQREGLNWLWSLHTQGK--GGILGDDMGLGKTMQICSFLAGLFHSKLIKRALVVAPK 434
Query: 305 SLINHWVTENKKHNLNFNILKYY-KSLNADTFEHYHIV------VTTYDVLLAHFKLIKQ 463
+L+ HW+ E L+ +YY S A ++ +HI+ +TTYD++ + K ++
Sbjct: 435 TLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVRNNTKALQG 494
Query: 464 NKH----SSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDM 631
+ H W ++LDE H+IKN T + + +++R I+GTPI N ++
Sbjct: 495 DDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKEL 554
Query: 632 YSMINF 649
+++ NF
Sbjct: 555 WALFNF 560
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 93.5 bits (222), Expect = 1e-19
Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 6/180 (3%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA--KNNSVQLKTLIVCPL 304
L ++Q KG++W+I+ +NG G+LAD MGLGKT+ + ++ K N + L++ PL
Sbjct: 202 LKSYQLKGVKWLISLWQNGL--NGILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPL 259
Query: 305 SLINHWVTENKKHNLNFNILKYYKSLNA-DTFEHYHIVVTT---YDVLLAHFKLIKQNKH 472
S +++W E + + N + Y+ N D H+ T + +++ +++ +
Sbjct: 260 STLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAK 319
Query: 473 SSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
L W VV+DE H +KN K + L N+ +TGTP+ N +++S++NF+
Sbjct: 320 RILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFI 379
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 93.5 bits (222), Expect = 1e-19
Identities = 68/214 (31%), Positives = 115/214 (53%), Gaps = 20/214 (9%)
Frame = +2
Query: 71 KFFDQAPDN---DDPNFEHQTP-NLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTL 238
KF +Q DN DD + L +Q++GI W+ K + +G +L DDMGLGKTL
Sbjct: 1420 KFLEQLLDNSHIDDYKLCTELKVQLRRYQQEGINWL-GFLKRFKLHG-ILCDDMGLGKTL 1477
Query: 239 SVLMLIAKNNSVQ---------LKTLIVCPLSLINHWVTENKKH-NLNF-NILKYYKSLN 385
++A + + + ++IVCP +L+ HW E +K+ +L+ ++L+Y S
Sbjct: 1478 QASAIVASDAAERRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQ 1537
Query: 386 -----ADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGV 550
+ F ++++++T+YDV+ + Q FS W+ +LDE HIIKN K+ +
Sbjct: 1538 DRVSLREQFNNHNVIITSYDVVRKDVDYLTQ------FS--WNYCILDEGHIIKNAKSKI 1589
Query: 551 HNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
A L A +R ++GTPI N +++S+ +FL
Sbjct: 1590 TAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFL 1623
>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 678
Score = 92.7 bits (220), Expect = 2e-19
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 15/188 (7%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLI--------AKNNSVQLKT 286
LL +QK+ + W +E + GG+LAD+MG+GKT+ + L+ AK+ T
Sbjct: 134 LLKYQKEFLAWATIQELSA-VRGGILADEMGMGKTIQAISLVLARREVDRAKSREAVGHT 192
Query: 287 LIVCPLSLINHWVTENKKHNL--NFNILKYY---KSLNADTFEHYHIVVTTYDVLLAHFK 451
L++ P ++ W+ E + + +L+Y+ + N +Y V+TT ++ ++
Sbjct: 193 LVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPIVENEYR 252
Query: 452 LIK--QNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHW 625
+ S L S W+R+++DEAH IKN + A AL AT RW ++GTP+ N
Sbjct: 253 KDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVD 312
Query: 626 DMYSMINF 649
++YS++++
Sbjct: 313 ELYSLVSY 320
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 90.6 bits (215), Expect = 9e-19
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Frame = +2
Query: 128 NLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK---NNSVQLKTLIVC 298
+L +Q G+ W++ + + G+LAD+MGLGKT+ + L+A + + LIV
Sbjct: 535 SLREYQHIGLDWLVTMYE--KKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVV 592
Query: 299 PLSLINHWVTENKKHNLNFNILKYYKSLNADTFEH--------YHIVVTTYDVLLAHFKL 454
P S++ +W TE K F IL Y+ S + +H+ +TTY +++ K+
Sbjct: 593 PTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKM 652
Query: 455 IKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMY 634
K+ K W ++LDEAH+IKN K+ + R +TGTP+ N +++
Sbjct: 653 FKRKK--------WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELW 704
Query: 635 SMINFLQCRPFNDPRVWK 688
S+++FL F + +K
Sbjct: 705 SLMHFLMPHVFQSHQEFK 722
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 87.4 bits (207), Expect = 8e-18
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 4/188 (2%)
Frame = +2
Query: 119 QTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTL 289
Q L ++Q +G+QWM++ N G+LAD+MGLGKT+ + LIA ++ + L
Sbjct: 382 QGGELRSYQLEGLQWMVSLYNNDY--NGILADEMGLGKTIQTIALIAYLLESKDLHGPHL 439
Query: 290 IVCPLSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNK 469
I+ P +++ +W E + + Y S T I ++VL+ H+ LI ++K
Sbjct: 440 ILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLIMRDK 499
Query: 470 HSSLFSTCWHRVVLDEAHIIKNCKTGV-HNAACALTATNRWCITGTPIHNKHWDMYSMIN 646
+ L W+ +++DE H +KN + + R +TGTPI N +++S++N
Sbjct: 500 -AFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLN 558
Query: 647 FLQCRPFN 670
FL FN
Sbjct: 559 FLLPHIFN 566
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 86.6 bits (205), Expect = 1e-17
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 5/185 (2%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCP 301
L ++Q +G+QWM++ N G+LAD+MGLGKT+ + LIA +N V LIV P
Sbjct: 433 LRSYQLEGLQWMVSLFNNNL--NGILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAP 490
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIV-VTTYDVLLAHFKLIKQNKHSS 478
+++ +WV E + Y L I ++VL+ H+ LI ++K +
Sbjct: 491 KAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIREKIAGEGKFNVLITHYDLIMRDK-AF 549
Query: 479 LFSTCWHRVVLDEAHIIKNCKTGV-HNAACALTATNRWCITGTPIHNKHWDMYSMINFLQ 655
L W+ +++DE H +KN ++ + R +TGTPI N +++S++NFL
Sbjct: 550 LKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLL 609
Query: 656 CRPFN 670
FN
Sbjct: 610 PHIFN 614
>At3g57300.1 68416.m06378 transcriptional activator, putative similar
to transcriptional activator SRCAP [Homo sapiens]
GI:5106572; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1507
Score = 85.4 bits (202), Expect = 3e-17
Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCP 301
L +Q KG+QW++N + G G+LAD+MGLGKT+ + +A + ++ L+V P
Sbjct: 586 LKEYQMKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 643
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTFEH--------------YHIVVTTYDVLL 439
S++N+W E + + L Y+ L T +HI++T+Y +L+
Sbjct: 644 ASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRRDAGFHILITSYQLLV 703
Query: 440 AHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNK 619
K ++ K W +VLDEA IK+ + + NR +TGTPI N
Sbjct: 704 TDEKYFRRVK--------WQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNN 755
Query: 620 HWDMYSMINFLQCRPFND 673
+++++++F+ F++
Sbjct: 756 MAELWALLHFIMPMLFDN 773
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 85.4 bits (202), Expect = 3e-17
Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Frame = +2
Query: 284 TLIVCPLSLINHWVTENKKH---NLNFNILKYYK-SLNADTFEHYHIVVTTYDVLLAHFK 451
TLIVCP SL+ W E +K + ++L Y+ S D E + YDV++ +
Sbjct: 635 TLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHE-----LAKYDVVITTYS 689
Query: 452 LIKQNKHSS----------LFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITG 601
L+ + KH L W RVVLDEA IKN KT A L A RWC++G
Sbjct: 690 LVSKRKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSG 749
Query: 602 TPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKN 703
TPI N D+YS FL+ P++ + + KN
Sbjct: 750 TPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKN 783
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 2 NNRSLIEENSRLATMDNYKLQLQKFFDQAPDNDDPNFEHQTPNLLAHQKKGIQWMINREK 181
NN ++ S M N+ LQ + + P+ +LL HQ+ + WM +E
Sbjct: 501 NNCGGLKFESNKGNM-NFHADLQDLSQHSSEASPPDGVLAV-SLLRHQRIALSWMSQKET 558
Query: 182 NGRPN-GGVLADDMGLGKTLSVLMLIAKNNS 271
+G P GG+LADD GLGKT+S + LI S
Sbjct: 559 SGNPCFGGILADDQGLGKTVSTIALILTERS 589
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 85.0 bits (201), Expect = 4e-17
Identities = 53/178 (29%), Positives = 96/178 (53%), Gaps = 7/178 (3%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCPLSL 310
+Q G+ W+I +NG G+LAD+MGLGKTL + L+A + + ++V P S
Sbjct: 197 YQLAGLNWLIRLYENGI--NGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKST 254
Query: 311 INHWVTENKKHNLNFNILKYYKSLNADTFEHYH---IVVTTYDVLLAHFKLIKQNKHSSL 481
+ +W+ E ++ +K+ N + H +V +D+ + F++ + K ++L
Sbjct: 255 LGNWMNEIRRFCPVLRAVKFLG--NPEERRHIREELLVAGKFDICVTSFEMAIKEK-TTL 311
Query: 482 FSTCWHRVVLDEAHIIKNCKTGVHNAACALTATN-RWCITGTPIHNKHWDMYSMINFL 652
W +++DEAH IKN + + + L +TN R ITGTP+ N ++++++NFL
Sbjct: 312 RRFSWRYIIIDEAHRIKN-ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 85.0 bits (201), Expect = 4e-17
Identities = 53/178 (29%), Positives = 96/178 (53%), Gaps = 7/178 (3%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCPLSL 310
+Q G+ W+I +NG G+LAD+MGLGKTL + L+A + + ++V P S
Sbjct: 197 YQLAGLNWLIRLYENGI--NGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKST 254
Query: 311 INHWVTENKKHNLNFNILKYYKSLNADTFEHYH---IVVTTYDVLLAHFKLIKQNKHSSL 481
+ +W+ E ++ +K+ N + H +V +D+ + F++ + K ++L
Sbjct: 255 LGNWMNEIRRFCPVLRAVKFLG--NPEERRHIREELLVAGKFDICVTSFEMAIKEK-TTL 311
Query: 482 FSTCWHRVVLDEAHIIKNCKTGVHNAACALTATN-RWCITGTPIHNKHWDMYSMINFL 652
W +++DEAH IKN + + + L +TN R ITGTP+ N ++++++NFL
Sbjct: 312 RRFSWRYIIIDEAHRIKN-ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 85.0 bits (201), Expect = 4e-17
Identities = 53/178 (29%), Positives = 96/178 (53%), Gaps = 7/178 (3%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCPLSL 310
+Q G+ W+I +NG G+LAD+MGLGKTL + L+A + + ++V P S
Sbjct: 192 YQLAGLNWLIRLYENGI--NGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKST 249
Query: 311 INHWVTENKKHNLNFNILKYYKSLNADTFEHYH---IVVTTYDVLLAHFKLIKQNKHSSL 481
+ +W+ E ++ +K+ N + H +V +D+ + F++ + K ++L
Sbjct: 250 LGNWMNEIRRFCPVLRAVKFLG--NPEERRHIREDLLVAGKFDICVTSFEMAIKEK-TAL 306
Query: 482 FSTCWHRVVLDEAHIIKNCKTGVHNAACALTATN-RWCITGTPIHNKHWDMYSMINFL 652
W +++DEAH IKN + + + L +TN R ITGTP+ N ++++++NFL
Sbjct: 307 RRFSWRYIIIDEAHRIKN-ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 363
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 81.4 bits (192), Expect = 5e-16
Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 16/239 (6%)
Frame = +2
Query: 2 NNRSLIEENSRLATMDNYKLQLQKFFDQAPDNDDPNFEHQTPNLLA-----HQKKGIQWM 166
++ +LIE +Y +K++ A + N Q +L+ +Q G++W+
Sbjct: 707 DDETLIENEDESDQAKHYLESNEKYYLMAHSIKE-NINEQPSSLVGGKLREYQMNGLRWL 765
Query: 167 INREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCPLSLINHWVTENK 337
++ N G+LAD+MGLGKT+ V+ LI + + + L+V P S++ W +E
Sbjct: 766 VSLYNNHL--NGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSE-- 821
Query: 338 KHNLNFNILKYYKSLNADTFEHYH------IVVTTYDVLLAHFKLIKQNKHS--SLFSTC 493
+NF +K + T + IV ++VLL ++ + NKH L
Sbjct: 822 ---INFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYL-MNKHDRPKLSKIH 877
Query: 494 WHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFN 670
WH +++DE H IKN ++ +++R +TGTP+ N ++++++NFL FN
Sbjct: 878 WHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFN 936
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 81.4 bits (192), Expect = 5e-16
Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 16/239 (6%)
Frame = +2
Query: 2 NNRSLIEENSRLATMDNYKLQLQKFFDQAPDNDDPNFEHQTPNLLA-----HQKKGIQWM 166
++ +LIE +Y +K++ A + N Q +L+ +Q G++W+
Sbjct: 707 DDETLIENEDESDQAKHYLESNEKYYLMAHSIKE-NINEQPSSLVGGKLREYQMNGLRWL 765
Query: 167 INREKNGRPNGGVLADDMGLGKTLSVLMLIA---KNNSVQLKTLIVCPLSLINHWVTENK 337
++ N G+LAD+MGLGKT+ V+ LI + + + L+V P S++ W +E
Sbjct: 766 VSLYNNHL--NGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSE-- 821
Query: 338 KHNLNFNILKYYKSLNADTFEHYH------IVVTTYDVLLAHFKLIKQNKHS--SLFSTC 493
+NF +K + T + IV ++VLL ++ + NKH L
Sbjct: 822 ---INFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYL-MNKHDRPKLSKIH 877
Query: 494 WHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFN 670
WH +++DE H IKN ++ +++R +TGTP+ N ++++++NFL FN
Sbjct: 878 WHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFN 936
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 81.0 bits (191), Expect = 7e-16
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 13/187 (6%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK--------NNSVQLKT 286
LL HQ++G+++M N KN +GG+L DDMGLGKT+ + +A S L++
Sbjct: 139 LLEHQREGVKFMYNLYKNN--HGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLES 196
Query: 287 -----LIVCPLSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFK 451
LI+CP S+I++W +E + F + Y+ S N D + +VL+ F
Sbjct: 197 DKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGS-NRDMILE-KLKARGVEVLVTSFD 254
Query: 452 LIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDM 631
+ + L W V+ DEAH +KN K+ ++ A + R +TGT + NK ++
Sbjct: 255 TFRI-QGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISEL 313
Query: 632 YSMINFL 652
+++ ++
Sbjct: 314 FNLFEWV 320
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 79.4 bits (187), Expect = 2e-15
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Frame = +2
Query: 56 KLQLQKFFDQAPDNDDPNFEHQTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKT 235
++ Q D A +D +F+ P L +Q G+ +++ K G G +LAD+MGLGKT
Sbjct: 191 RIVTQNDIDDACKAEDSDFQ---PILKPYQLVGVNFLLLLYKKGI-EGAILADEMGLGKT 246
Query: 236 LSV---LMLIAKNNSVQLKTLIVCPLSLINHWVTENKKHNLNFNILKYYKSLNADTFEHY 406
+ L L+++ N+ L+VCP S++ +W E +K +F +L+Y+ + A
Sbjct: 247 IQAITYLTLLSRLNNDPGPHLVVCPASVLENWERELRKWCPSFTVLQYHGAARAAYSREL 306
Query: 407 HIVVTT-----YDVLLAHFKLIKQNKHSS------LFSTCWHRVVLDEAHII--KNCKTG 547
+ + ++VLL + L +++ L W V++DEAH + KN
Sbjct: 307 NSLSKAGKPPPFNVLLVCYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRW 366
Query: 548 VHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
+ + A A R +TGTP+ N +++S++ F+
Sbjct: 367 KNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFM 401
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 78.6 bits (185), Expect = 4e-15
Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Frame = +2
Query: 113 EHQTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKT-L 289
E T L +Q +G+ ++ R + +LAD+MGLGKT+ + +A L L
Sbjct: 219 EFLTGTLHTYQLEGLNFL--RYSWSKKTNVILADEMGLGKTIQSIAFLASLFEENLSPHL 276
Query: 290 IVCPLSLINHWVTENKKHNLNFNILKYYKSLNADT--FEHYHIVV----TTYDVLLAHFK 451
+V PLS I +W E + N++ Y A +EH + +DVLL ++
Sbjct: 277 VVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYE 336
Query: 452 LIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDM 631
++ S L W +++DE H +KN K+ ++++ T+ + +TGTP+ N ++
Sbjct: 337 MVHPGI-SVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNEL 395
Query: 632 YSMINFLQCRPFNDPRVWKMLNKNQRL 712
+++++FL F ++ +NK +++
Sbjct: 396 FALMHFLDADKFGSLEKFQDINKEEQI 422
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 78.2 bits (184), Expect = 5e-15
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 10/191 (5%)
Frame = +2
Query: 122 TPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTL---SVLMLIAKNNSVQLKTLI 292
T L HQ +G+ W+I + G N + D MGLGKTL S L + + L+
Sbjct: 48 TATLKPHQVEGVSWLIQKYLLG-VNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLV 106
Query: 293 VCPLSLINHWVTENKKHNLNFNILKYY------KSLNADTFEHYHIVVTTYDVLLAHFKL 454
+CPLS+ + WV+E + N +L+Y + ++H H + +DVLL + +
Sbjct: 107 LCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHGHFL--PFDVLLTTYDI 164
Query: 455 IKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAAC-ALTATNRWCITGTPIHNKHWDM 631
++ L W ++DEA +KN + ++N R ITGTPI N ++
Sbjct: 165 ALVDQ-DFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTEL 223
Query: 632 YSMINFLQCRP 664
+++++F C P
Sbjct: 224 WALMHF--CMP 232
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 77.4 bits (182), Expect = 9e-15
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 9/187 (4%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTL-SVLMLIAKNNSVQLKT--LIVCPLSL 310
+Q +G+ +++N N +LAD+MGLGKT+ SV ML N+ Q+ L+V PLS
Sbjct: 628 YQLEGLNFLVNSWLND--TNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLST 685
Query: 311 INHWVTENKKHNLNFNILKYY-----KSLNADTFEHYHIV-VTTYDVLLAHFKLIKQNKH 472
+ +W E +K NI+ Y + + T + + + ++ LL ++++ ++K
Sbjct: 686 LANWAKEFRKWLPGMNIIVYVGTRASREVRNKTNDVHKVGRPIKFNALLTTYEVVLKDK- 744
Query: 473 SSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
+ L W +++DEAH +KN + ++ A + N+ ITGTP+ N +++++++FL
Sbjct: 745 AVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFL 804
Query: 653 QCRPFND 673
F +
Sbjct: 805 DPGKFKN 811
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 77.0 bits (181), Expect = 1e-14
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Frame = +2
Query: 131 LLAHQKKGIQWMIN----REKNGRPNGGVLADDMGLGKTLSVLMLIAK-------NNSVQ 277
L HQ++G+Q+M + + NG +LADDMGLGKTL + L+ +
Sbjct: 76 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMV 135
Query: 278 LKTLIVCPLSLINHWVTENKKH-NLNFNILKYYKSLNADTF---EHYHIVVTTYDVLLAH 445
K +IV P SL+++W E KK ++ +S D + + + VL+
Sbjct: 136 KKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLIIS 195
Query: 446 FKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHW 625
++ + + S ++ DEAH +KN +T + A +LT R ++GTP+ N
Sbjct: 196 YETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLE 255
Query: 626 DMYSMINF 649
+ ++M+NF
Sbjct: 256 EFFAMVNF 263
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 75.4 bits (177), Expect = 4e-14
Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 16/195 (8%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK---NNSVQLKTLIVCP 301
L AHQ + + W+ R + +LAD+MGLGKT+S ++ V L++ P
Sbjct: 675 LFAHQLEALNWL--RRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVARPCLVLVP 732
Query: 302 LSLINHWVTENKKHNLNFNILKYYKSLNADTF---EHYHIVVTT----------YDVLLA 442
LS + +W++E N+++Y+ S +H +T ++VLL
Sbjct: 733 LSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTSYKFNVLLT 792
Query: 443 HFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKH 622
++++ + S L W +V+DE H +KN ++ + + + +R +TGTP+ N
Sbjct: 793 TYEMVLADS-SHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNI 851
Query: 623 WDMYSMINFLQCRPF 667
+MY+++NFLQ F
Sbjct: 852 GEMYNLLNFLQPSSF 866
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 73.7 bits (173), Expect = 1e-13
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 14/195 (7%)
Frame = +2
Query: 122 TPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTL---SVLMLIAKNNSVQLKTLI 292
T L HQ +G+ W+I + G N + D MGLGKTL S L + + L+
Sbjct: 48 TATLKPHQVEGVSWLIQKYLLG-VNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLV 106
Query: 293 VCPLSLINHWVTENKKHNLNFNILKY----YKSLNADTFEHYHIVVTT------YDVLLA 442
+CPLS+ + WV+E + N +L+Y Y L+ + H+ ++ +DVLL
Sbjct: 107 LCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLT 166
Query: 443 HFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAAC-ALTATNRWCITGTPIHNK 619
+ + ++ L W ++DEA +KN + ++N R ITGTPI N
Sbjct: 167 TYDIALVDQ-DFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNN 225
Query: 620 HWDMYSMINFLQCRP 664
+++++++F C P
Sbjct: 226 LTELWALMHF--CMP 238
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 53.2 bits (122), Expect(2) = 1e-13
Identities = 25/79 (31%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQL--KTLIVCPL 304
L +Q+ G+QW+ E + + GG++ D+MGLGKT+ VL + + ++ ++I+CP+
Sbjct: 385 LFDYQRVGVQWLW--ELHCQRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPV 442
Query: 305 SLINHWVTENKKHNLNFNI 361
+L+ W E +K +F++
Sbjct: 443 TLLRQWRREAQKWYPDFHV 461
Score = 40.3 bits (90), Expect(2) = 1e-13
Identities = 27/99 (27%), Positives = 46/99 (46%)
Frame = +2
Query: 356 NILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKN 535
N K+ LN +++TTY+ L + + L + W VLDE H I+N
Sbjct: 501 NTKKWDSLLNRVLNSESGLLITTYEQL--------RLQGEKLLNIEWGYAVLDEGHRIRN 552
Query: 536 CKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
+ + L +R +TG PI NK +++S+ +F+
Sbjct: 553 PNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFV 591
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = +2
Query: 473 SSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFL 652
S L S W+R++LDEAH IK ++ A AL AT RW ++GTP+ N+ ++YS+I FL
Sbjct: 347 SLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFL 406
Query: 653 QCRPFN 670
Q RP++
Sbjct: 407 QIRPYS 412
Score = 58.0 bits (134), Expect = 6e-09
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLK--------T 286
LL +QK+ + W +E++ GG+LAD+MG+GKT+ + L+ V T
Sbjct: 139 LLRYQKEFLAWATKQEQSVA--GGILADEMGMGKTIQAISLVLARREVDRAQFGEAAGCT 196
Query: 287 LIVCPLSLINHWVTENKKHNL--NFNILKYY---KSLNADTFEHYHIVVTTYDVLLAHFK 451
L++CPL ++ W+ E + + +L Y+ ++ N F +Y V+TTY + + ++
Sbjct: 197 LVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESEYR 256
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
pombe}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 69.3 bits (162), Expect = 2e-12
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Frame = +2
Query: 284 TLIVCPLSLINHWVTENKKH--NLNFNILKYYKSLNADTFE---HYHIVVTTYDVLLAHF 448
TLIV P +L+NHW+T+ +KH + IL + + Y +V+TT+ L A +
Sbjct: 756 TLIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIELSPHSLAWDYDVVITTFSRLSAEW 815
Query: 449 KLIKQNKHSSLFSTCWHRVVLDEAHIIKN--CKTGVHNAACALTATNRWCITGTPIHNKH 622
K S L W RV+LDE H + + T A +LTA NRW +TGTP N
Sbjct: 816 ---NPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTP 872
Query: 623 WDMYS----MINFLQCRPFND-PRVWK 688
S ++ FL + + P+ W+
Sbjct: 873 NSQLSHIQPLLKFLHEEVYGENPKFWE 899
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 197 GGVLADDMGLGKTLSVLMLIAK 262
GG+ D+ GLGKT++ L LI K
Sbjct: 389 GGMFCDEPGLGKTITALSLILK 410
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Frame = +2
Query: 119 QTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKT---L 289
Q L +Q G+QWM++ N G+LAD+MGLGKT+ V+ LIA + L
Sbjct: 977 QAGTLRDYQLVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHL 1034
Query: 290 IVCPLSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNK 469
I+ P +++ +W +E + + + Y + + + + ++VL+ ++ I ++
Sbjct: 1035 IIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVKFEKFNVLVTTYEFIMYDR 1094
Query: 470 HSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINF 649
S L W +++DEA +K+ ++ + R +TGTP+ N +++S++N
Sbjct: 1095 -SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL 1153
Query: 650 L 652
L
Sbjct: 1154 L 1154
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = +2
Query: 494 WHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPF 667
W RVVLDEA IKN +T V A C L A RWC++GTPI N D+YS FL+ P+
Sbjct: 471 WFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPY 528
Score = 51.2 bits (117), Expect = 7e-07
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +2
Query: 20 EENSRLATMDNYKLQLQKFFDQAPDNDDPNFEHQTPNLLAHQKKGIQWMINREKNG-RPN 196
E NS Y+ LQ+ + D P P L+ HQK + WM +E N
Sbjct: 190 ERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVP-LMKHQKIALAWMFQKETNSLHCM 248
Query: 197 GGVLADDMGLGKTLSVLMLIAKN-NSVQLKT 286
GG+LADD GLGKT+S + LI K + +LK+
Sbjct: 249 GGILADDQGLGKTVSTIALILKQMHEAKLKS 279
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 284 TLIVCPLSLINHW---VTENKKHNLNFNILKYY-KSLNADTFE--HYHIVVTTYDVL 436
TLIVCP S++ W + E ++L Y+ + D E Y +V+TTY ++
Sbjct: 345 TLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIV 401
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 68.9 bits (161), Expect = 3e-12
Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 5/183 (2%)
Frame = +2
Query: 119 QTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKT---L 289
Q L +Q G+QWM++ N G+LAD+MGLGKT+ V+ LIA + L
Sbjct: 977 QAGTLRDYQLVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHL 1034
Query: 290 IVCPLSLINHWVTENKKHNLNFNILKYY--KSLNADTFEHYHIVVTTYDVLLAHFKLIKQ 463
I+ P +++ +W +E + + + Y K + F + ++VL+ ++ I
Sbjct: 1035 IIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQ-EVCAMKFNVLVTTYEFIMY 1093
Query: 464 NKHSSLFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMI 643
++ S L W +++DEA +K+ ++ + R +TGTP+ N +++S++
Sbjct: 1094 DR-SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL 1152
Query: 644 NFL 652
N L
Sbjct: 1153 NLL 1155
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 68.1 bits (159), Expect = 5e-12
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Frame = +2
Query: 284 TLIVCPLSLINHWVTENKKHN-LNFNILKYYKSL-NADTFE----------HYHIVVTTY 427
TLIVCP ++ W +E +H L I Y+ + NA E + IV+TTY
Sbjct: 486 TLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTTY 545
Query: 428 DVL---LAH-FKLIKQNKHSSLFST------------CWHRVVLDEAHIIKNCKTGVHNA 559
DVL L H F ++H F W R+ LDEA ++++
Sbjct: 546 DVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFWWRICLDEAQMVESNAAAATEM 605
Query: 560 ACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVW 685
A L +RWCITGTPI K D++ ++ FL+ PF+ R W
Sbjct: 606 ALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWW 647
Score = 24.6 bits (51), Expect(2) = 2.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 209 ADDMGLGKTLSVLMLI 256
AD+MGLGKT+ +L I
Sbjct: 345 ADEMGLGKTVELLACI 360
Score = 23.4 bits (48), Expect(2) = 2.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 125 PNLLAHQKKGIQWMINREK 181
P L +Q++ WM+ RE+
Sbjct: 286 PELRPYQRRAAYWMVQRER 304
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/64 (50%), Positives = 38/64 (59%)
Frame = +2
Query: 479 LFSTCWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQC 658
L W RVVLDEA IKN KT V A L A RWC++GTPI N D+YS FL+
Sbjct: 789 LAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 848
Query: 659 RPFN 670
P++
Sbjct: 849 DPYS 852
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 122 TPNLLAHQKKGIQWMINREKNGRP-NGGVLADDMGLGKTLSVLMLIAKNNS 271
T LL HQ+ + WM +E +G P +GG+LADD GLGKT+S + LI K S
Sbjct: 560 TVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERS 610
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +2
Query: 284 TLIVCPLSLINHWVTE-NKK--HNLNFNILKYY-KSLNADTFE--HYHIVVTTYDVL 436
TL+VCP S++ W E +KK N ++L Y+ S D E Y +VVTT+ ++
Sbjct: 674 TLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIV 730
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = +2
Query: 494 WHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPF 667
W R+VLDEA IKN +T + + C L A RWC++GTPI N D+YS FL+ P+
Sbjct: 542 WFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPY 599
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 53 YKLQLQKFFDQAPDNDDPNFEHQTPNLLAHQKKGIQWMINREKNG-RPNGGVLADDMGLG 229
Y+ LQ ++D P P L+ HQK + WM +E + GG+LADD GLG
Sbjct: 256 YQAALQVLNQPMTESDLPPGTLSVP-LMRHQKIALAWMFQKETSSFNCPGGILADDQGLG 314
Query: 230 KTLSVLMLIAKNNSV-QLKTLIVC 298
KT+S + LI K V QLK+ C
Sbjct: 315 KTVSTIALILKQKIVSQLKSESSC 338
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = +2
Query: 284 TLIVCPLSLINHW---VTENKKHNLNFNILKYY---KSLNADTFEHYHIVVTTYDVL 436
TLIVCP S++ W + E ++L Y+ ++ + + Y +VVTTY ++
Sbjct: 416 TLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIV 472
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 57.2 bits (132), Expect = 1e-08
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Frame = +2
Query: 98 DDPNFEHQTPNLLA-----HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK 262
D F+H TP L +Q +G+ ++ R + +LAD+MGLGKT+ + L+A
Sbjct: 258 DFQQFDH-TPEFLKGLLHPYQLEGLNFL--RFSWSKQTHVILADEMGLGKTIQSIALLAS 314
Query: 263 NNSVQL-KTLIVCPLSLINHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTT----- 424
L L++ PLS + +W E N++ Y+ + A H +
Sbjct: 315 LFEENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKK 374
Query: 425 -------------------YDVLLAHFKLIKQNKHSSLFSTCWHRVVLDEAHIIKNCKTG 547
+DVLL +++I + + L W +++DE H +KN +
Sbjct: 375 IKKKKSGQISSESKQKRIKFDVLLTSYEMINLDS-AVLKPIKWECMIVDEGHRLKNKDSK 433
Query: 548 VHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPF 667
+ ++ ++ +R +TGTP+ N +++ +++FL F
Sbjct: 434 LFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKF 473
>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
domain-containing protein contains similarity to
DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
contains PFam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2
Length = 673
Score = 44.4 bits (100), Expect = 8e-05
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 116 HQTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQ--LKTL 289
H P LL Q++GI++++ + GR +LAD+MGLGKTL IA VQ L
Sbjct: 167 HIEPKLLPFQREGIEFIL--QHGGRV---LLADEMGLGKTLQA---IAVTTCVQESWPVL 218
Query: 290 IVCPLSLINHWVT 328
I+ P SL HW T
Sbjct: 219 IIAPSSLRLHWAT 231
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 503 VVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQ 655
+V DEAHIIKN K A + R +TG+P+ N + Y M++F++
Sbjct: 840 LVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 890
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Frame = +2
Query: 131 LLAHQKKGIQWM-------INREKNGRPN-GGVLADDMGLGKTLSVLMLI---AKNNSVQ 277
L HQ GI++M I+R K+G G +LA MGLGKT V+ + + +
Sbjct: 687 LKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLG 746
Query: 278 LKT-LIVCPLSLINHWVTENKK 340
LKT LIV P++++++W +E +K
Sbjct: 747 LKTALIVTPVNVLHNWRSEFEK 768
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 36.7 bits (81), Expect = 0.015
Identities = 37/204 (18%), Positives = 89/204 (43%), Gaps = 17/204 (8%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSV--QLKTLIVCPLSLI 313
HQ +G +++ N P G +LA G GKT ++ + ++ Q + L+V P +I
Sbjct: 268 HQTEGFRFLCNNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARPLVVLPKGII 327
Query: 314 NHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTY----DVLLAHF----KLIKQNK 469
W E + L + S+ A++ + V+ + +L + ++I +
Sbjct: 328 ESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILFLGYQQFTRIICDDN 387
Query: 470 HSSLFSTCW-------HRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWD 628
+ C ++LDE H +N +T + ++ + + +TGT N +
Sbjct: 388 FEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNNVEE 447
Query: 629 MYSMINFLQCRPFNDPRVWKMLNK 700
++++++ ++ + P +++++
Sbjct: 448 VFNILDLVRPKFLKRPGTREIVSR 471
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 33.1 bits (72), Expect = 0.19
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Frame = +2
Query: 131 LLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAKNNSVQLKTLIVCPLSL 310
LL Q G+++ + R GR +AD+MGLGKTL + IA + L+VCP L
Sbjct: 204 LLPFQLDGLRFGLRR--GGRC---FIADEMGLGKTLQAI-AIAGCFISEGSILVVCPAVL 257
Query: 311 INHWVTENKKHNLNFNILKYYKSLNADTFEHYHIVVTTYDVLLAHFKLIKQNKHSSLFST 490
W E ++ + L L ++ + V++ +K++ Q+ +++
Sbjct: 258 RFTWAEELERWLP--SCLPSDVHLVFGHQDNPAYLPRWPKVVVISYKML-QHLRTTMLER 314
Query: 491 CWHRVVLDEAHIIK--NCKTGVHNAACALTATNR----WCITGTPIHNKHWDMYSMINFL 652
W +++DE+H ++ K+ L + ++GTP ++ +D++ IN L
Sbjct: 315 EWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINML 374
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 140 HQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIAK--NNSVQLKTLIVCPLSLI 313
HQ +G Q++ + P G ++A G GKT ++ + Q K L+V P ++
Sbjct: 353 HQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKPLVVLPKGIL 412
Query: 314 NHWVTE 331
W E
Sbjct: 413 PTWKKE 418
>At5g41370.1 68418.m05027 DNA repair protein, putative / TFIIH basal
transcription factor complex helicase XPB subunit,
putative (XPB1) contains Pfam profile PF00271:Helicase
conserved C-terminal domain; identical to cDNA putative
DNA repair protein (XPB1) GI:10314019
Length = 767
Score = 29.5 bits (63), Expect = 2.3
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Frame = +2
Query: 89 PDNDDPNFEHQTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA--K 262
PD D H P +Q+K + M NGR G++ G GK+L + A K
Sbjct: 270 PDLDMELKPHAQPR--PYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAAARIK 324
Query: 263 NNSVQLKTLIVCPLSLINHWVTENKK-HNLNFNILKYYKSLNADTFE-HYHIVVTTYDVL 436
+ + L T V ++ W + K + + + + S + + F + +VVTTY+++
Sbjct: 325 KSCLCLATNAVS----VDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMV 380
Query: 437 LAHFKLIKQNKH--SSLFSTCWHRVVLDEAHII 529
K ++++ + + W +++DE H++
Sbjct: 381 AFGGKRSEESEKIIEEMRNREWGLLLMDEVHVV 413
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 503 VVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV 682
+VLDEAH +N ++ + + R ++GTP N ++ +++ RP R+
Sbjct: 186 LVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVLGL--ARPKYLERL 243
Query: 683 WKMLNKN 703
L K+
Sbjct: 244 TSTLKKS 250
>At1g18410.1 68414.m02299 kinesin motor protein-related similar to
kinesin-related protein GB:AAF24855 GI:6692749 from
[Arabidopsis thaliana]
Length = 1140
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 216 SSASTPPLGRPFFSLLIIHCMPFF*CANRLGV*CSKLGSSLSGA 85
S P G +++ MPFF C + + CS GSS G+
Sbjct: 126 SPCDFPRFGEMILLSPVLNPMPFFSCCTKRAIFCSSPGSSHGGS 169
>At5g41360.1 68418.m05026 DNA repair protein and transcription
factor, putative (XPB2) similar to SP|P49135 TFIIH basal
transcription factor complex helicase XPB subunit (EC
3.6.1.-) (Basic transcription factor 2 89 kDa subunit)
{Mus musculus}; contains Pfam profile PF00271: Helicase
conserved C-terminal domain; contains TIGRfam profile
TIGR00603: DNA repair helicase rad25
Length = 766
Score = 28.7 bits (61), Expect = 4.0
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 6/153 (3%)
Frame = +2
Query: 89 PDNDDPNFEHQTPNLLAHQKKGIQWMINREKNGRPNGGVLADDMGLGKTLSVLMLIA--K 262
PD D H P +Q+K + M NGR G++ G GK+L + A K
Sbjct: 270 PDLDMELKPHAQPR--PYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAAARIK 324
Query: 263 NNSVQLKTLIVCPLSLINHWVTENKK-HNLNFNILKYYKSLNADTFE-HYHIVVTTYDVL 436
+ + L T V ++ W + K + + + + S + + F + +VVTTY+++
Sbjct: 325 KSCLCLATNAVS----VDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVTTYNMI 380
Query: 437 LAHFKLIKQNKH--SSLFSTCWHRVVLDEAHII 529
K ++ + + + W +++DE H++
Sbjct: 381 AFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVV 413
>At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 278 LKTLIVCPLSLINHWVTENK 337
+ TL +CP+S I+ W ENK
Sbjct: 46 IATLFICPISFISAWRKENK 65
>At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 278 LKTLIVCPLSLINHWVTENK 337
+ TL +CP+S I+ W ENK
Sbjct: 46 IATLFICPISFISAWRKENK 65
>At2g46520.1 68415.m05798 cellular apoptosis susceptibility protein,
putative / importin-alpha re-exporter, putative similar
to cellular apoptosis susceptibility protein [Homo
sapiens] GI:3598795, SP|Q9ERK4 Importin-alpha
re-exporter (Chromosome segregation 1-like protein)
(Cellular apoptosis susceptibility protein) {Mus
musculus}; contains Pfam profiles PF03810: Importin-beta
N-terminal domain, PF03378: CAS/CSE protein C-terminus
Length = 972
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 255 ININTESVLPSPMSSASTPPLGRPFFSLLIIHCMPFF 145
I + T S++ S SS +PP+ +P F + C F+
Sbjct: 193 IFLKTSSLIDSAASSGGSPPILKPLFESQRLCCTIFY 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,847,113
Number of Sequences: 28952
Number of extensions: 341696
Number of successful extensions: 1129
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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