Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a14
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10486| Best HMM Match : FGF (HMM E-Value=5.7e-20) 37 0.015
SB_59452| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4) 29 2.9
SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_53310| Best HMM Match : VHS (HMM E-Value=0) 28 6.7
SB_31947| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 28 6.7
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 6.7
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11) 27 8.9
>SB_10486| Best HMM Match : FGF (HMM E-Value=5.7e-20)
Length = 344
Score = 36.7 bits (81), Expect = 0.015
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Frame = +1
Query: 121 RFLAVNPNGTVYGGTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTL 300
RFLA+N NGT+ GT+ S + TF+ + + + I++ T ++ +DR G+L +
Sbjct: 217 RFLAMNENGTI-SGTL-SQGVNETFELQSYGPSIVRIRHVKTGFFIAMDRRGRLRAKRVS 274
Query: 301 SDDCFMRE--IMEKNNYNTYY-----KMYDRKL--TYVALKNDGTPR 414
RE +K+ N + K Y R ++ L+ G PR
Sbjct: 275 EITALTREANFFQKHEENLFVSFASEKFYMRNAFDMFLGLRKGGDPR 321
>SB_59452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 184 DTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTY 354
+TT + + +N + I + YL ID G+L S+D + E N+++T+
Sbjct: 102 ETTLEIHTLSKNTVRIYSPKVKKYLAIDSNGRLCSKGKASEDTVLHHTHELNDFHTF 158
>SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4)
Length = 205
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 373 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 489
KLTY+A +G +S R LGK V +KRLS
Sbjct: 147 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 185
>SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 373 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 489
KLTY+A +G +S R LGK V +KRLS
Sbjct: 138 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 176
>SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 240 HYVCVPVHRPV--WPTVRIKNFIR*LLYEGNYGK 335
HY+C+P +P+ W + + + ++Y G+YG+
Sbjct: 770 HYLCIPAEKPIEEWRPSELGHKLEEVVYCGDYGQ 803
>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
Length = 253
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 175 DNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTY 354
D + KR+ + RN + A+T + C++ CG+++ + S D F+ E T+
Sbjct: 76 DALRSIMKRV-IHRNPHIAMQALTLLSACVNNCGKVFHLEICSRD-FVSEAKSILLSRTH 133
Query: 355 YKMYDR 372
K+ D+
Sbjct: 134 PKVMDK 139
>SB_31947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 231 NDDAISVNGKALECGVGVVRFNGSAVNGSVWIYCQKPPVNK 109
++ A SVNG+ E GV V F + +WI K + K
Sbjct: 27 SESAYSVNGQPFESGVNVSVFKRPGADALLWIETAKQQMIK 67
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 159 RNH*IGQRRHHIQAPCR*QKSHRHSKRHYVC 251
R+H RHH PC HR + HY C
Sbjct: 34 RHHHYCWYRHHYHYPCYRHYYHRCYRHHYCC 64
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 181 ADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREI 327
A + K+ DRN V + A+T + C+ CG + + + D FM E+
Sbjct: 113 AVSAIKKKMFDRNPHVAKYALTVLEACMKNCGSIIHDEIATKD-FMDEM 160
>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +3
Query: 366 RSQVDVCGTEERRYSPKTTDFKGPQAGQV*RVRHDFIETLKFSYIHV 506
R+++ +C RR+ T+ KGP + R + DF+ + ++ +
Sbjct: 59 RTRIRLCSFAARRFPCGTSHAKGPGKYETWRTKKDFLAKVNIVFVEL 105
>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
Length = 878
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 180 RRHHIQAPCR*QKSHRHSKRHYVCVPVHRPV 272
R HH + K H+HS R C P RP+
Sbjct: 36 RSHHKEYSATSPKRHKHSDRRRPCNPSWRPL 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,726,460
Number of Sequences: 59808
Number of extensions: 385594
Number of successful extensions: 1216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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