Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a14
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24830.1 68417.m03557 arginosuccinate synthase family contain... 29 1.8
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi... 29 1.8
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 27 2.0
At5g58140.4 68418.m07274 protein kinase family protein / non pho... 29 2.4
At5g58140.3 68418.m07277 protein kinase family protein / non pho... 29 2.4
At5g58140.2 68418.m07276 protein kinase family protein / non pho... 29 2.4
At5g58140.1 68418.m07275 protein kinase family protein / non pho... 29 2.4
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 25 4.4
At5g52270.1 68418.m06487 vesicle transport protein-related simil... 28 5.5
>At4g24830.1 68417.m03557 arginosuccinate synthase family contains
Pfam profile: PF00764 arginosuccinate synthase
Length = 494
Score = 29.5 bits (63), Expect = 1.8
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Frame = +1
Query: 46 SMADCSALLTHITGTSIPGRL-FINRRFLAVNPNGTVY---GGTIESDNADTTFKRLAVD 213
S A A L I G GR+ + R + + G VY GGTI A + L +D
Sbjct: 331 SPATLLAELNTIGGKHGIGRIDMVENRLVGMKSRG-VYETPGGTILFA-AVQELESLTLD 388
Query: 214 RNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDRKLTYVAL 393
R I +++ + Y + G+ + S D FM +I E + K+Y ++
Sbjct: 389 RESIQVKDTLALKYAEMVYAGRWFDPLRESMDAFMEKITETTTGSVTLKLYKGSVSVTGR 448
Query: 394 KNDGTPRKLQIS 429
++ + + IS
Sbjct: 449 QSPNSLYRQDIS 460
>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 658
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +1
Query: 208 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKN 339
+ RN +V+ N++ +Y +CG+L + L D+ MR+++ +N
Sbjct: 85 IHRNALVVWNSLLSLYA---KCGKLVDAIKLFDEMPMRDVISQN 125
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 27.1 bits (57), Expect(2) = 2.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 129 GSKSKRNRLRRNH*IGQRRHHIQAPC 206
G + K+N L + +G+ RH++ APC
Sbjct: 745 GIRIKKNALHYSIAVGESRHYVCAPC 770
Score = 20.6 bits (41), Expect(2) = 2.0
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 237 RHYVCVPVH 263
RHYVC P +
Sbjct: 763 RHYVCAPCY 771
>At5g58140.4 68418.m07274 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 689
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 161 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 256
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
>At5g58140.3 68418.m07277 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 161 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 256
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
>At5g58140.2 68418.m07276 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 161 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 256
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
>At5g58140.1 68418.m07275 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 161 EPLNRTTPTPHSSALPLTEIASSFKTPLRVCT 256
+P + TTPTP E + SF+TP RV T
Sbjct: 297 KPDSSTTPTPGRQTRQSDEASKSFRTPGRVST 328
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 24.6 bits (51), Expect(2) = 4.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 129 GSKSKRNRLRRNH*IGQRRHHIQAPC 206
G++ KRN + G+ RH++ PC
Sbjct: 951 GARVKRNAMHYTVVAGESRHYVCIPC 976
Score = 21.8 bits (44), Expect(2) = 4.4
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 237 RHYVCVPVH 263
RHYVC+P +
Sbjct: 969 RHYVCIPCY 977
>At5g52270.1 68418.m06487 vesicle transport protein-related similar
to vesicle trafficking protein sec22b [Mus musculus]
GI:1907386
Length = 214
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +1
Query: 340 NYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGK 450
++++++ + ++K+ Y+AL + PRKL + + L K
Sbjct: 60 DHHSFHFLVEKKICYIALSDSSYPRKLLFNYLQNLNK 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,598,905
Number of Sequences: 28952
Number of extensions: 255416
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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