Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a10
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   1.8  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    23   5.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   5.4  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    23   7.2  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    22   9.5  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    22   9.5  

>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  GCMNNSAYL*VFLLQNCYENSKILIYLRDG 109
           GC+N   YL  +L+  C +NSKILI    G
Sbjct: 131 GCLNGR-YLSRYLML-CLQNSKILIVCETG 158


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 80  SKILIYLRDGYYFHLY 127
           S  +IYL D ++FH Y
Sbjct: 79  SDAVIYLEDQFHFHCY 94


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 30   IIRHIYRFFYYKTVTKTVKYL 92
            I+ +   F +YK + ++VKYL
Sbjct: 1085 ILNYASNFGHYKAIVQSVKYL 1105


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 18  GGV*IIRHIYRFFYYKTVTKTVKYL 92
           GG+     I  FFYY   T T ++L
Sbjct: 254 GGITFFLTIGLFFYYPDNTSTARFL 278


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 54  FYYKTVTKTVKYLFIC 101
           FYY  ++K + YL IC
Sbjct: 111 FYYIELSKILLYLLIC 126


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 31  IHTPPPSGVL 2
           IH PPPSG L
Sbjct: 171 IHVPPPSGKL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,482
Number of Sequences: 5004
Number of extensions: 11268
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)