Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a10
         (163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    26   3.6  
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559...    25   8.3  

>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 17  WGCMNNSAYL*VFLLQNCYENSKILIYLRDG 109
           WG +N + Y+ + +L+N  + +++L+   DG
Sbjct: 153 WGVINGATYVNIDMLENNKDKTRMLLVEDDG 183


>04_03_0129 -
           11554917-11555033,11555470-11555613,11555807-11555999,
           11556083-11556139,11556300-11556403,11556882-11556953,
           11557069-11557187,11557639-11557783,11558527-11558672,
           11558758-11558827,11559000-11559056,11559081-11559228,
           11559311-11559432,11559649-11559845,11560296-11560350,
           11560468-11560680,11561239-11561386,11561515-11561585,
           11563286-11563316,11563532-11563623,11565621-11565688,
           11567895-11568069
          Length = 847

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 38  AYL*VFLLQNCYENSKILIYLRDGYYFHLY 127
           AY  + ++ NC  +SK L +  D Y FH+Y
Sbjct: 592 AYPDIQIISNCDGSSKPLDHPADIYDFHVY 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,351,262
Number of Sequences: 37544
Number of extensions: 55315
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)