Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a08
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362... 29 1.0
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719... 29 1.0
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 28 1.3
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431... 28 1.3
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934... 27 3.1
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816... 27 3.1
10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667... 27 3.1
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 27 3.1
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 26 5.4
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 26 5.4
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 26 7.2
09_02_0417 - 8915604-8916779,8916863-8917270 25 9.5
01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804... 25 9.5
>08_01_0409 +
3625071-3625228,3625829-3625905,3626310-3626889,
3626974-3627111,3627318-3627387,3627449-3627933,
3628681-3628890,3629259-3629326,3629855-3629961,
3630275-3630346,3630448-3630614,3630709-3630820,
3631464-3631650,3632174-3632286
Length = 847
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 93 VPNCSKQGFTMFSAISCLVIFCSSSEWGFQSI*ILFIVVGRFTIIVLVFCLIS 251
+P + GF FSAI + + +S WG + I I+ F I+++V ++
Sbjct: 433 IPQMAMAGFLPFSAIYIELYYIFASIWGHKIYTIYSILFIVFIILIIVTAFVT 485
>03_02_0296 +
7191455-7191615,7192031-7192071,7192156-7192741,
7193307-7193444,7193572-7193728,7193848-7194332,
7194867-7195086
Length = 595
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 93 VPNCSKQGFTMFSAISCLVIFCSSSEWGFQSI*ILFIVVGRFTIIVLVFCLIS 251
+P + GF FSAI + + +S WG + I I+ F I+++V I+
Sbjct: 453 IPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFIT 505
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 93 VPNCSKQGFTMFSAISCLVIFCSSSEWGFQSI*ILFIVVGRFTIIVLVFCLIS 251
+P + GF FSAI + + +S WG + I I+ F I+++V I+
Sbjct: 440 IPQMAMAGFLPFSAIYIELYYIFASIWGHRIYTIYSILFIVFIILLIVTAFIT 492
>07_03_0451 +
18340166-18340533,18340576-18341006,18343057-18343184,
18343329-18343958,18344761-18345480
Length = 758
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 119 YNVFGNLLFSHFLFVFGMGFPIYLNSVHS 205
YNVF NL + + F+ G P + VH+
Sbjct: 728 YNVFVNLFLNFWSFIIIFGLPAVIRKVHA 756
>12_02_1173 +
26692030-26692379,26692478-26692565,26693309-26693436,
26693514-26693705,26693810-26694012,26694127-26694290,
26694419-26694499,26694592-26694758,26694839-26694944,
26695097-26695347,26695388-26695508,26695594-26695722,
26695813-26696181
Length = 782
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 187 IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQKAM 8
+DW HS Q+ + C+ F I+H + N + ++ NS S +K +
Sbjct: 641 LDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII---NMDADVITIENSRSDEKLL 697
Query: 7 TV 2
+V
Sbjct: 698 SV 699
>12_02_1172 +
26680246-26680595,26680693-26680780,26681478-26681605,
26681683-26681874,26681979-26682181,26682296-26682459,
26682597-26682677,26682770-26682936,26683015-26683120,
26683269-26683519,26683610-26683682,26683751-26683879,
26683963-26684331
Length = 766
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 187 IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQKAM 8
+DW HS Q+ + C+ F I+H + N + ++ NS S +K +
Sbjct: 625 LDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSII---NMDADVITIENSRSDEKLL 681
Query: 7 TV 2
+V
Sbjct: 682 SV 683
>10_02_0200 -
6672743-6673717,6676257-6676634,6677017-6677301,
6677420-6677570,6677696-6677930,6678689-6678764
Length = 699
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 91 ILHIYVCPLNHNRIIVEYANSESVQ 17
ILH+ +CP RI V +N +V+
Sbjct: 493 ILHVLICPFEKLRIFVNISNRRTVR 517
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 80 IRMSFKSQPNYCRVCKLRVSTKSHDC 3
+ +SF + PNY + C L +S DC
Sbjct: 422 LSLSFNNLPNYLKTCLLYLSIFPEDC 447
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 117 FTMFSAISCLVIFCSSSEW 173
F F+ ISC + FC S W
Sbjct: 220 FKFFTGISCCLCFCFGSPW 238
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 250 EIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENIVK 116
++ + T TI +RP R+ +D KPHS + ++ + E IVK
Sbjct: 98 QVSEATVTI-AERP--WERVVVDGKPHSHGFKLGVEKHVTEVIVK 139
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -2
Query: 274 RVQKLYNREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQE---IAENIVKPCFE 104
R Q++ ++K T K PT+ + D K +DE + KQ+ N+ P +
Sbjct: 195 RSQEIGKSLARKKLATREQKNPTSPDITNNDQKDQWDDEHPVLKQKCTPAGTNLKNPEVD 254
Query: 103 QFGTILHIYVC 71
Q G I + +C
Sbjct: 255 QNGLIQTLAMC 265
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -2
Query: 292 YQFIFDRVQKLYNREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENI 122
+ F FD K + K K + TM ++ SED ++M +EI E +
Sbjct: 229 HNFAFDHCWKAVWNQPKWKAYMSCLFTKRTMQSDSWEYMSSSEDSEEMPGKEIGEEV 285
>01_05_0491 -
22680011-22680125,22680210-22680307,22680392-22680472,
22680564-22680677,22680757-22680823,22680947-22681017,
22681099-22681236,22681324-22681530,22681630-22681773,
22681856-22682017,22682117-22682173,22682256-22682348,
22682425-22682542,22682678-22682817,22683031-22683590,
22683703-22683805
Length = 755
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 220 VKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILH 83
V+ P+ +NR D +P E+E + ++ VKP G +H
Sbjct: 293 VRLPSNVNRDDPDLEPTPENEDENENEKAVYCEVKPMIVDRGVDIH 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,938,626
Number of Sequences: 37544
Number of extensions: 109524
Number of successful extensions: 323
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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