Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a08
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 28   1.8  
SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)                  28   1.8  
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)                 27   2.3  
SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)                   27   3.1  
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   26   5.4  
SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_28163| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   7.2  
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  26   7.2  
SB_26731| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_45205| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     25   9.5  
SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_926| Best HMM Match : No HMM Matches (HMM E-Value=.)                25   9.5  

>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 154  KMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSE-SVQKAMT 5
            K+TK ++A    K C +    +  +Y+ P  H    + Y NS  +V +++T
Sbjct: 971  KLTKSQVALMFDKSCRKAIDEVSGVYLKPNKHRFSYIYYTNSSMNVSESVT 1021


>SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)
          Length = 256

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 154 KMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSE-SVQKAMT 5
           K+TK ++A    K C +    +  +Y+ P  H    + Y NS  +V +++T
Sbjct: 144 KLTKSQVALMFDKSCRKAIDEVSGVYLKPNKHRFSYIYYTNSSMNVSESVT 194


>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
          Length = 97

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 196 RIQIDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILHIYV 74
           RI +D  P S      +K+  AE+I +  FEQ+GTI  ++V
Sbjct: 15  RIDVDNPPFSRVFIVCSKRHNAEDI-RSAFEQYGTIEDVWV 54


>SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)
          Length = 651

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 283 IFDRVQKLYNREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENI 122
           ++  ++ LY  EIK   K   V++  ++N   + +K  S  E  +  + +AE +
Sbjct: 17  LYKEIESLYIEEIKSSNKIKCVEQCLSLNGKNVTFKLDSGAECNVIPEAVAEEL 70


>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 527

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = -2

Query: 256 NREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILHIY 77
           N  I Q T+   V     +N +   W PH++    +T  EI      P        +H Y
Sbjct: 182 NGGIPQGTRLCPVLFAVMVNDLMASWLPHAKFVDHLTLLEIVPRNSPPVMNFLVEDIHNY 241

Query: 76  VCPLNHNRII 47
           V   +HN ++
Sbjct: 242 V--NSHNMVL 249


>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 143 TRDCRKHCKALF*TIWHHITHIRMSFKSQPNYCR 42
           +R C KHC   +  +W    + +  F+   NYC+
Sbjct: 198 SRTCEKHCVLFYRDVWKMYLN-KGEFELAKNYCQ 230


>SB_28163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 86  THIRMSFKSQPNYCRVCKLRVSTK 15
           TH+R   K +P  C+ CK ++S +
Sbjct: 92  THLRTHAKEKPFQCKYCKKKLSIR 115


>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 83  HIRMSFKSQPNYCRVCKLRVSTKSH 9
           HIR+    +P  CR C  R S  SH
Sbjct: 525 HIRIHTGERPYECRYCDKRFSQPSH 549


>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 226 IIVKRPTTMNRIQ-IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILHIYVCPL 65
           ++V  P+  N  Q +D+    E     T Q+  + I++  + +FG    +++C L
Sbjct: 41  LLVSDPSGANSTQNVDYDQLRETLNATTIQDYKDEIMRLMYLEFGVTTFVFLCVL 95


>SB_26731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 97 GTILHIYVCPLNHNRIIV 44
          G ILHI +CP++H+  +V
Sbjct: 44 GDILHILLCPVSHHISVV 61


>SB_45205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 86  THIRMSFKSQPNYCRVCKLRVSTKSH 9
           TH+R+  K +P  C VC    + K+H
Sbjct: 67  THLRIHTKVKPYECEVCGKCFTRKTH 92


>SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 92  HITHIRMSFKSQPNYCRVCKLRVSTKS 12
           H+ H+    K +P+ C VCK R S  S
Sbjct: 304 HVLHVHE--KHRPHECHVCKKRFSQSS 328


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 86  THIRMSFKSQPNYCRVCKLRVST 18
           THIRM    +P  C VC    +T
Sbjct: 441 THIRMHTGERPYVCEVCSFAFTT 463


>SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 86  THIRMSFKSQPNYCRVCKLRVSTKSH 9
           TH+R+  K +P  C VC    + K+H
Sbjct: 67  THLRIHTKVKPYECEVCGKCFTRKTH 92


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 169 SEDEQKMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQ 17
           ++DE+K   + IA+ I +P F  +  +L +Y    +    I +Y+N E  Q
Sbjct: 212 TKDERKDFYRTIAKGIKRPLFAIYRRVLRMY----DRRNYIGKYSNEEVEQ 258


>SB_926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 192 ILFIVVGRFTIIVLVFCLISRLYNFCTLS 278
           +L  V  RF++++ + C+ S+LY  C LS
Sbjct: 49  VLRFVFYRFSLVMRLRCIGSQLYCACVLS 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,754
Number of Sequences: 59808
Number of extensions: 145069
Number of successful extensions: 425
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)