Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a08
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   0.49 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   3.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   3.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   3.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   8.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.0  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -1

Query: 95 HHIT-HIRMSFKSQPNYCRVCKLRVSTKS 12
          HH+  H+R  F S+P  C  C      KS
Sbjct: 2  HHLEYHLRNHFGSKPFKCEKCSYSCVNKS 30


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 125 HCKALF*TIWHHITHIRMSFKSQPNYCRVC 36
           HC   F  + +   H+R+    +P  C +C
Sbjct: 42  HCDRQFVQVANLRRHLRVHTGERPYACELC 71


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 140 LFSHFLFVFGMGFPI 184
           ++SHF +VFG  F I
Sbjct: 114 IWSHFPYVFGEAFCI 128


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 136 IAENIVKPCFEQFGT 92
           + EN+V+ CF+Q  T
Sbjct: 195 VPENLVQACFQQAQT 209


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 440 FTLFTVLATIVILC 453


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 440 FTLFTVLATIVILC 453


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 440 FTLFTVLATIVILC 453


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 440 FTLFTVLATIVILC 453


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 440 FTLFTVLATIVILC 453


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 440 FTLFTVLATIVILC 453


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 74  MSFKSQPNYCRVCKLRVSTKSH 9
           M+F   P+  + CKL++ + SH
Sbjct: 165 MNFLIYPHDTQECKLQMESLSH 186


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 508 FTLFTVLATIVILC 521


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 FTMFSAISCLVIFC 158
           FT+F+ ++ +VI C
Sbjct: 508 FTLFTVLATIVILC 521


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 128 KHCKALF*TIWHHITHIRMSFKSQPNYCRVCK 33
           ++C   F    +   H R+  K +P  C VC+
Sbjct: 123 EYCSKSFSVKENLSVHRRIHTKERPYKCDVCE 154


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 144 LVIFCSSSEWGFQ 182
           LV+ CS+  W FQ
Sbjct: 544 LVMVCSAPVWRFQ 556


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 193  IQIDWKPHSEDEQKMTK 143
            +QI   PH + +Q+  K
Sbjct: 1096 VQIQQSPHQQQQQQQQK 1112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,937
Number of Sequences: 438
Number of extensions: 1392
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)