Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a04
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   261   7e-71
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   2.9  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.9  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   8.9  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  261 bits (640), Expect = 7e-71
 Identities = 125/209 (59%), Positives = 156/209 (74%), Gaps = 5/209 (2%)
 Frame = +2

Query: 146 DEDFVDPWTVTGK----SDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGI 313
           +E  V PW V G      + GIDY++LI +FG++KI  E ++RFEK+ G+K H LLRRG 
Sbjct: 4   EEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGA 63

Query: 314 FFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLT 493
           FFSHRD ++IL+ +E  K FYLYTGRGPSSDSMHLGHMIPFMF KWLQDVF VPL+IQLT
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLT 123

Query: 494 DDEKVLWRD-IKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQ 670
           DDEK L++  + +ED ++ A  NAKDIIA+GFDP  TFIF +  ++G   AFYQN++RI 
Sbjct: 124 DDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVG--GAFYQNVVRIA 181

Query: 671 KCVTYNQVKGIFXFGDSDVIGQITFPSIE 757
           KC+T NQ K  F F DSD IG+I F SI+
Sbjct: 182 KCITANQSKACFGFTDSDSIGKIHFASIQ 210


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 128 NIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVI 277
           N+   ED+DF+D  T T   +   DY  + ++  +   D ++  +  K I
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSI 398


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 745 ECNLANDIRITETEYALYLVVCDTFLYP*HVLVKSWA 635
           +CN+   I    T      V+CD  + P  V++K WA
Sbjct: 164 DCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWA 200


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 254 IQRFEKVIGRKAHHLLRRGIFFSHRDLNVILNL 352
           + R +   GRK H ++   +F  HRD++   +L
Sbjct: 414 LHRVKLPFGRKIHFVVMNNLFPPHRDIHQTFDL 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,870
Number of Sequences: 5004
Number of extensions: 67583
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)