Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a04
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4762| Best HMM Match : tRNA-synt_1b (HMM E-Value=0.00013)          138   6e-33
SB_25654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_4762| Best HMM Match : tRNA-synt_1b (HMM E-Value=0.00013)
          Length = 396

 Score =  138 bits (333), Expect = 6e-33
 Identities = 58/102 (56%), Positives = 80/102 (78%)
 Frame = +2

Query: 149 EDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFSHR 328
           E  V   TV    +TGIDY+KLI++FG   ++   ++R E++ G+ AHHLL+RG+FFSHR
Sbjct: 18  EQVVTMETVIAADNTGIDYNKLIRQFGCFHLEPSHLERIERLTGKPAHHLLKRGVFFSHR 77

Query: 329 DLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWL 454
           DL+ +L+++E GK FYLYTGRGPSS+SMHLGH+IPF+FT W+
Sbjct: 78  DLDAMLDVYEKGKPFYLYTGRGPSSESMHLGHLIPFIFTNWV 119


>SB_25654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -3

Query: 738 IWPMTSESPKXNMPF---TWLYVTHFCILNMFW 649
           +WP+ + +P+   PF   TW  + H C     W
Sbjct: 80  LWPIVNTTPELESPFDKMTWKAILHDCTTQKLW 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,601,056
Number of Sequences: 59808
Number of extensions: 467756
Number of successful extensions: 848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)