Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a04
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04600.2 68416.m00491 tRNA synthetase class I (W and Y) famil...   260   9e-70
At3g04600.1 68416.m00490 tRNA synthetase class I (W and Y) famil...   260   9e-70
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    29   3.4  
At3g19330.3 68416.m02453 polyadenylate-binding protein-related /...    28   7.7  
At3g19330.2 68416.m02452 polyadenylate-binding protein-related /...    28   7.7  
At3g19330.1 68416.m02451 polyadenylate-binding protein-related /...    28   7.7  

>At3g04600.2 68416.m00491 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 402

 Score =  260 bits (636), Expect = 9e-70
 Identities = 114/217 (52%), Positives = 158/217 (72%)
 Frame = +2

Query: 107 MAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRK 286
           M  DK         E  V+PW V+ K    IDYDKLI +FG Q++D+ LI R +++  R+
Sbjct: 1   MEVDKKDEREAESSEQVVNPWEVSAKDGGKIDYDKLIDKFGCQRLDESLIDRVQRLTSRQ 60

Query: 287 AHHLLRRGIFFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVF 466
            H  LRR +FF+HRD N IL+ +E G KFYLYTGRGPSS+++HLGH+IPFMFTK+LQ+ F
Sbjct: 61  PHVFLRRSVFFAHRDFNEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQEAF 120

Query: 467 NVPLIIQLTDDEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAF 646
            VPL+IQLTDDEK +W+++ VE+++++A  NAKDIIA GFD + TFIF+D D++G   AF
Sbjct: 121 KVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAF 178

Query: 647 YQNMLRIQKCVTYNQVKGIFXFGDSDVIGQITFPSIE 757
           Y+NM+++ KCVT N+  GIF F   D I +++FP ++
Sbjct: 179 YKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQ 215


>At3g04600.1 68416.m00490 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 402

 Score =  260 bits (636), Expect = 9e-70
 Identities = 114/217 (52%), Positives = 158/217 (72%)
 Frame = +2

Query: 107 MAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRK 286
           M  DK         E  V+PW V+ K    IDYDKLI +FG Q++D+ LI R +++  R+
Sbjct: 1   MEVDKKDEREAESSEQVVNPWEVSAKDGGKIDYDKLIDKFGCQRLDESLIDRVQRLTSRQ 60

Query: 287 AHHLLRRGIFFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVF 466
            H  LRR +FF+HRD N IL+ +E G KFYLYTGRGPSS+++HLGH+IPFMFTK+LQ+ F
Sbjct: 61  PHVFLRRSVFFAHRDFNEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQEAF 120

Query: 467 NVPLIIQLTDDEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAF 646
            VPL+IQLTDDEK +W+++ VE+++++A  NAKDIIA GFD + TFIF+D D++G   AF
Sbjct: 121 KVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAF 178

Query: 647 YQNMLRIQKCVTYNQVKGIFXFGDSDVIGQITFPSIE 757
           Y+NM+++ KCVT N+  GIF F   D I +++FP ++
Sbjct: 179 YKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFPPVQ 215


>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 377 LYTGRGPSSDSMHLGHMIPFMFTKWLQ 457
           +Y G  P+++S+HLG+++  +   W Q
Sbjct: 117 VYCGFDPTAESLHLGNLLGIIVLSWFQ 143


>At3g19330.3 68416.m02453 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 345

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 143 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK-IDDELIQRFEKVIGRKAH 292
           +D D +D   +  +  TGI+YDK + R G ++  D   IQ   K++ RK+H
Sbjct: 261 KDLDTID--RLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLL-RKSH 308


>At3g19330.2 68416.m02452 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 349

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 143 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK-IDDELIQRFEKVIGRKAH 292
           +D D +D   +  +  TGI+YDK + R G ++  D   IQ   K++ RK+H
Sbjct: 261 KDLDTID--RLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLL-RKSH 308


>At3g19330.1 68416.m02451 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 382

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 143 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK-IDDELIQRFEKVIGRKAH 292
           +D D +D   +  +  TGI+YDK + R G ++  D   IQ   K++ RK+H
Sbjct: 293 KDLDTID--RLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLL-RKSH 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,855
Number of Sequences: 28952
Number of extensions: 333851
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)