Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8a01
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...   182   6e-47
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...   145   7e-36
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...   102   5e-23
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    31   0.17 
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    31   0.17 
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    29   0.68 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    28   1.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.8  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   3.6  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   3.6  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   4.8  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   8.4  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   8.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   8.4  

>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score =  182 bits (442), Expect = 6e-47
 Identities = 93/175 (53%), Positives = 115/175 (65%), Gaps = 1/175 (0%)
 Frame = +1

Query: 157 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLILGTHTS 336
           ++ I EEYK+WK+N PFLYDLV+THALEWPSLT QWLPD     G DYS+ RLILGTHTS
Sbjct: 23  QKTIQEEYKLWKQNVPFLYDLVITHALEWPSLTIQWLPDKKTIPGTDYSIQRLILGTHTS 82

Query: 337 -DEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVNRARY 513
            ++QN+L IASVQLPN D   D + +           + S  I+I  KI H+G+VNRARY
Sbjct: 83  GNDQNYLQIASVQLPNFDE--DTTEFTPSTIR-RAQATGSYTIEISQKIPHDGDVNRARY 139

Query: 514 MPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNP 678
           MPQ P +IAT     +  +FD T H +    +GE  P   L+GH  EG+GL WNP
Sbjct: 140 MPQKPEIIATMGEGGNAYIFDTTCHDAL--TTGEALPQAVLKGHTAEGFGLCWNP 192



 Score = 30.3 bits (65), Expect = 0.30
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 484 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYG 663
           H   +N     P N  ++AT +    V ++D         P    H    L GH+ E YG
Sbjct: 280 HSKAINAVAINPFNDYLLATASADKTVALWDLRN------PYQRLHT---LEGHEDEVYG 330

Query: 664 LSWNP 678
           L W+P
Sbjct: 331 LEWSP 335


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score =  145 bits (351), Expect = 7e-36
 Identities = 76/177 (42%), Positives = 107/177 (60%), Gaps = 4/177 (2%)
 Frame = +1

Query: 157 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLILGTHTS 336
           E  I+E++  WKKN+  LY+L++T  L WPSL+ QWL  +     K    +RL+LGTH +
Sbjct: 17  ENQISEDHFRWKKNSKHLYNLLITRTLTWPSLSIQWLSAMESITEKAVLKNRLLLGTHAA 76

Query: 337 DEQ-NHLLIASVQLP--NEDAQFDASHYDNDKGEFGGFG-SVSGKIDIEIKINHEGEVNR 504
           +   N L +A + LP  N+       HY+ D GE GG+    S K  I  +I H G+VNR
Sbjct: 77  EGMPNFLQLADLDLPDFNQTILDPVKHYNEDTGELGGYSMQHSCKFQISQRILHNGDVNR 136

Query: 505 ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWN 675
            R+MPQNP +IAT +   +  +FD TK+ S   P+ E  P++ L GH+KEG+GLSWN
Sbjct: 137 VRHMPQNPNIIATMSSCGNAYIFDRTKYTSM--PAEEFLPNISLIGHKKEGFGLSWN 191


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score =  102 bits (245), Expect = 5e-23
 Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
 Frame = +1

Query: 154 EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLILGTHT 333
           +E+ INEEYKIWKKN+PFLYDL++T ALEWP ++ QW P+        Y+  ++ LG   
Sbjct: 22  QEKCINEEYKIWKKNSPFLYDLIITRALEWPCMSLQWYPEQQIFAEHGYTEQKMFLGVRA 81

Query: 334 SDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVNRARY 513
              +  L +AS+QLP  +     +  +   G   G  S S +++I    +H   V  A+ 
Sbjct: 82  DVGKYLLAVASIQLPYLNQTVPPTTME---GASAGDES-SLRVNISNLYSHPESVCSAKL 137

Query: 514 MPQ-NPCVIATKTPSSDVLVFDYTKHPSKPEPS-GECHPDLRLRGHQKEGYGLSWN 675
           MPQ + CV       +DVLVFD     S    S     P  RL  H +    + WN
Sbjct: 138 MPQDDSCVATVGNYHNDVLVFDKESFESYSSASESPLKPKYRLTKHTQPCTSVCWN 193


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 667 TSHNLLFDDHAILDQDGTLQKAQVWRGALYNQRQVH 560
           T  ++L+DD  + D+ G  +  Q WRG  Y+  +VH
Sbjct: 671 TPQHILYDDKPVADKTGLCE--QTWRGKDYSNARVH 704


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 12/171 (7%)
 Frame = +1

Query: 202 PFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLILGTHTSDEQNHLLIASVQLPN 381
           P +Y+++    ++WP L+   L D    + + +     ++G   + + N   +  ++L  
Sbjct: 91  PSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMYLVGGSQALDSNDNELTVMKLSQ 150

Query: 382 EDAQFDASHYDNDKGEFGGFGSVSGKIDIEIK-INHEGEVNRARYM--PQNPC---VIAT 543
               +   H +ND         V     +E K I+ +G  NR R    P N     ++A+
Sbjct: 151 ---LYKTQHDENDDASDNS--DVEEDPILEHKSISTKGACNRVRSARRPANSSKESLLAS 205

Query: 544 KTPSSDVLVFDYTKHPSKPEPSG------ECHPDLRLRGHQKEGYGLSWNP 678
              +  V ++D   H    +  G      E  P   +  H+ EGY L W+P
Sbjct: 206 FHETGKVHIWDIAPHLRSLDSPGVMVSRKENSPLYTVNRHKTEGYALDWSP 256


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 812

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
 Frame = +1

Query: 157  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLILGTHTS 336
            E+ IN    I   N P + +++ ++ +  PS+   W   +   +G D+S + ++L + ++
Sbjct: 609  EKSINSSNTI---NIP-ITEVMASNLITIPSIGFTWRKLLGMMEGYDFSGYPVVLDSRSN 664

Query: 337  DEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVNRARYM 516
                +L  +S++   E A+ + S   + +  FG   SV        K      ++ + YM
Sbjct: 665  YLIGYLKKSSLKSSFEAAKLEPSFTFDQQLCFGKVDSVGD--SKSSKFGESDRIDLSAYM 722

Query: 517  PQNP-CVIATKTPSSDVLVFD 576
              NP  V+ T++ ++  ++F+
Sbjct: 723  DVNPISVLHTQSIANVAVLFE 743


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 454 GKIDIEIKI--NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPD 627
           GK+  ++ +   H   V    + P +  V+A+    S ++++   +  +  EP  + HP 
Sbjct: 68  GKLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDYTVMEPYEDVHPI 127

Query: 628 LRLRGHQKEGYGLSWNP 678
             L+GH ++   + ++P
Sbjct: 128 AELKGHSRKVGLVQYHP 144


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 329 THLMNRITC*SPVCNYLMKMHNLMPAIMIMIKENLEALVLYQAR 460
           +HL + I     +CN L+ M    PAI +++K +   ++L   R
Sbjct: 127 SHLYDCIRSGVSICNRLLDMEIFEPAISLLMKTHKNLIILLTYR 170


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 484 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPS 609
           H+G+VN  ++MP +   +AT      V ++D  + P  P P+
Sbjct: 314 HKGDVNAVKWMPGSKSKLATCGDDCVVSLWDLDQ-PVNPSPA 354


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 159 LFNRVIEGFSVSFISHFVCNRIY 91
           +FNR+I GF  S  +H VC   Y
Sbjct: 217 MFNRIISGFHASISTH-VCQNYY 238


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
 Frame = +1

Query: 406 HYDNDKGEFGGFGSVSGKIDIE-----------IKINHEGEVNRARYMPQNPCVIATKTP 552
           +YD  +  +G   SVSG + +            +++ HE  V     + Q+ C I     
Sbjct: 17  NYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQDKCTIQVYEE 76

Query: 553 SSDVLVFDYTKHPSKP 600
           +S + V D  +   KP
Sbjct: 77  TSGLTVGDPVQRTGKP 92


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 249 RGPLQCMGHHQVVQKWCIFLPYFIFFVDYSLFNRVIEG 136
           R P   + HH+   K C  +  F + +D S+++  +EG
Sbjct: 32  RYPEIVVKHHEEFLKVCDIISTFTYQLDASIYDEKVEG 69


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 9   NSNAKNF--VWRLYRAGLSYQIITLKFHKNK 95
           N NA+ +   ++ Y++ L Y ++ LK+ KN+
Sbjct: 20  NDNAEQYPDAYKYYQSALDYFMMALKYEKNE 50


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
 Frame = +1

Query: 364 SVQLPNEDAQFDA---SHYDNDKG---EFGGFGSVSGKIDIEIKINHEGEVNRARYMPQN 525
           + Q    D  FD    S Y    G   E GG  S   K+ IE KI    E ++  Y+P N
Sbjct: 156 NTQSSETDVMFDCMRTSQYPVTSGYYYETGGHPSELRKLSIE-KIR---EYHKEMYVPSN 211

Query: 526 PCVIAT 543
            C+I T
Sbjct: 212 ICLIVT 217


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 249 AHCPVAPRCHQARRKGLFRTQTY 317
           A CP  P C++  RK  FR QT+
Sbjct: 52  AQCPT-PGCNKILRKAKFREQTF 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,709
Number of Sequences: 5004
Number of extensions: 68602
Number of successful extensions: 203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)