Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a01
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278... 173 1e-43
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 137 7e-33
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 30 0.053
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 32 0.41
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156... 30 1.6
10_03_0023 - 7151465-7152111,7152222-7152405 30 2.2
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807... 30 2.2
02_02_0552 + 11426761-11428815 30 2.2
11_01_0560 - 4413174-4414469 29 3.8
01_06_0242 + 27827272-27827517,27828420-27828478,27828620-278287... 29 5.0
10_08_0898 + 21424379-21424792,21424974-21425723 28 6.6
02_02_0557 + 11470259-11472307 28 6.6
>03_05_0448 -
24426509-24426737,24427306-24427401,24427723-24427847,
24428694-24428846,24429921-24430247,24431415-24431630,
24431768-24432112,24433897-24434253
Length = 615
Score = 173 bits (421), Expect = 1e-43
Identities = 77/112 (68%), Positives = 91/112 (81%), Gaps = 1/112 (0%)
Frame = +1
Query: 133 ETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHR 312
E F VEER+INEEYKIWKKNTPFLYDLV+THALEWPSLT QWLPD P GKD+SV +
Sbjct: 10 EEFRAEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRAEPAGKDHSVQK 69
Query: 313 LILGTHTSD-EQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKID 465
++LGTHTSD E N+L++A VQLP +DA+ DA HYD+D E GGFG+ SGK +
Sbjct: 70 MVLGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDDHAEIGGFGAASGKFE 121
Score = 136 bits (328), Expect = 2e-32
Identities = 72/151 (47%), Positives = 97/151 (64%), Gaps = 13/151 (8%)
Frame = +1
Query: 262 WLPDVTRPDGKDYSVHRLILGTH----TSDEQNHLLIASVQLP---NEDAQF------DA 402
WLP G+D +++LGTH + N+L+IA QL +ED ++ D
Sbjct: 235 WLP------GQDQH-QKMVLGTHHPQNSEKSPNYLIIAQAQLSCDDDEDIEYPCGDVEDM 287
Query: 403 SHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT 582
+ ++D G +G+ S K+ I +INH+GEVNRARYMPQN +IATKT S++V VFDY+
Sbjct: 288 EYCESDDANSGLYGAGSSKVQIVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYS 347
Query: 583 KHPSKPEPSGECHPDLRLRGHQKEGYGLSWN 675
KHPSKP G C+PDLRL+GH EGYGLSW+
Sbjct: 348 KHPSKPPLDGACNPDLRLKGHNSEGYGLSWS 378
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 484 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYG 663
H+GEVN + P N V+AT + V +FD K + + +C H++E +
Sbjct: 463 HQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKIDTSLH-TFDC--------HKEEVFQ 513
Query: 664 LSWNPK 681
+ W+PK
Sbjct: 514 VGWSPK 519
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 484 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPEPSGECHPDLRL--RGHQK 651
H+ EV + + P+N ++A+ ++V+D ++ PE + + P+L GH
Sbjct: 507 HKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQTPEDAEDGPPELLFIHGGHTS 566
Query: 652 EGYGLSWNPKP*WI 693
+ SWNP W+
Sbjct: 567 KISDFSWNPCEDWV 580
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 137 bits (332), Expect = 7e-33
Identities = 82/185 (44%), Positives = 102/185 (55%), Gaps = 1/185 (0%)
Frame = +1
Query: 127 DGETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSV 306
DG + A EE++ WKKN P LYDLV++ LEWPSLT QWLP +R G S
Sbjct: 2 DGGSSTAARSSAAEMEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARS- 60
Query: 307 HRLILGTHTSDE-QNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKIN 483
HRL+LGTHTSDE NHLL+A LP A+ G + + I +
Sbjct: 61 HRLVLGTHTSDETPNHLLLADAALPLPPRLAAAA-------AAAGGAVPAPSVSISRSVP 113
Query: 484 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYG 663
H+GEVNRAR MPQ P +ATKT +V V+ H G D+ LRGH+ EGYG
Sbjct: 114 HKGEVNRARCMPQRPYTVATKTCVDEVHVY----HLGDGGEKGGA--DVVLRGHEAEGYG 167
Query: 664 LSWNP 678
L+W+P
Sbjct: 168 LAWSP 172
Score = 31.1 bits (67), Expect = 0.94
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 490 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPEPSGECHPDLRL--RGHQKEG 657
GEV + + P V+A+ V+++D ++ E + + P+L GH +
Sbjct: 302 GEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAKI 361
Query: 658 YGLSWNPKP*WI 693
LSWNP W+
Sbjct: 362 SELSWNPTQKWV 373
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 30.3 bits (65), Expect(2) = 0.053
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 475 KINHEGEVNRARYMPQNPCVIAT--KTPSSDVLVFDYTKHPSK 597
K+ H G VNR R M Q P + AT T VL+FD SK
Sbjct: 138 KVAHAGCVNRIRSMNQEPHICATWGDTGHVQVLIFDSRGTESK 180
Score = 23.8 bits (49), Expect(2) = 0.053
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 619 HPDLRLRG-HQKEGYGLSWNP 678
H +++ G H+ EGY + W+P
Sbjct: 218 HVPVKIFGSHKDEGYAIDWSP 238
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 32.3 bits (70), Expect = 0.41
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +1
Query: 109 KMGDKGDGETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL-PDVTRP 285
K+G G G + +E+ ++ N PF+ MT+ ++ ++ QW D+
Sbjct: 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIK 64
Query: 286 DGKDYSVHR---LILGTHTSDEQNHLLIASVQLPNEDAQFD 399
D K + + G + DE N ++ASV+L + QF+
Sbjct: 65 DSKTLLLGEKPVTVFGI-SLDESNLFMVASVELMFDPVQFE 104
>12_01_0207 -
1559491-1559544,1559806-1560161,1560244-1560363,
1561523-1561568,1561741-1561858,1561981-1562093,
1562586-1562658,1562743-1562882,1563005-1563075,
1563228-1563396,1563594-1563659,1564052-1564150,
1564271-1564444,1564720-1564798,1564901-1565007,
1565391-1565435
Length = 609
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 475 KINHEGEVNRARYMPQNPCVIAT--KTPSSDVLVFDYTKHPSK 597
K+ H G VNR R M Q P + AT T VL+FD SK
Sbjct: 138 KVAHAGCVNRIRSMNQEPHICATWGDTGHVQVLIFDSRGTESK 180
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 207 SVRLGDDPCTGVALAHCPVAPRCHQARRKGLFRTQ 311
SV G D T A++ PVA RCH + +FR Q
Sbjct: 48 SVHSGSD-ATKAAVSGAPVAVRCHDGNGRDVFRQQ 81
>07_03_0736 -
21079880-21080185,21080231-21080429,21080531-21080768,
21080888-21081098,21081181-21081320,21081400-21081537,
21086208-21087036
Length = 686
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 139 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ--WLPDVTRPDGKDYSVHR 312
F + + RV+ + PFL LVM H P TA +GKDY+V R
Sbjct: 225 FTNRIGGRVLGVRCSYRYEVNPFLNGLVMVHLTAPPIPTASPPAAAAAAAGEGKDYNVPR 284
Query: 313 LIL 321
L+L
Sbjct: 285 LVL 287
>02_02_0552 + 11426761-11428815
Length = 684
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 340 EQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVNR 504
+ NH+ I L + +A DA +YD++ GEF VSGK +++ ++++ + +
Sbjct: 174 DDNHVGIDINSLVSSNAS-DAGYYDDNTGEFKSLTLVSGKA-MQVWVDYDDDATQ 226
>11_01_0560 - 4413174-4414469
Length = 431
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 295 PFRLAW*HRGATGQ*ARATPVHGSSPSRTEMVYFSSIF-YILR*LLS-LQPRHRRFLR 128
PFRL W H A A TP S S + SS+F I R S +PR RR LR
Sbjct: 237 PFRLEWDHAAAPSSSATTTPSDSSLSSPPSL---SSVFPRIARVFPSRTKPRRRRTLR 291
>01_06_0242 +
27827272-27827517,27828420-27828478,27828620-27828701,
27828836-27828940
Length = 163
Score = 28.7 bits (61), Expect = 5.0
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +1
Query: 370 QLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVNRARYMPQNPCVIATKT 549
QL Q + + Y N G+ G +G +++ + G+V + Q P + ++
Sbjct: 50 QLEKIRLQSEMAEYFNPLGQPGSLIHRTGSLNL-MAYGERGDVRYGEF--QTPIM---RS 103
Query: 550 PSSDVLVF--DYTKHPSKPEPSGECHPDLRLRGH 645
PSS + YT +PS P E RLRGH
Sbjct: 104 PSSSTIYGAPHYTHNPSITLPLFEPEESARLRGH 137
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 274 HRGATGQ*ARATPVHGSSPSRTEMVYFSSIFYI 176
H G G+ + ATP SS +T M+ F+ FYI
Sbjct: 105 HIGGMGEPSGATPSATSSDHQTSMLSFADDFYI 137
>02_02_0557 + 11470259-11472307
Length = 682
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 346 NHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGK 459
NH+ I L + +A DA +YD++ GEF +SGK
Sbjct: 172 NHVGIDINSLVSSNAS-DAGYYDDNTGEFKSLTLISGK 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,287,706
Number of Sequences: 37544
Number of extensions: 450428
Number of successful extensions: 1158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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