Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a01
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 380 e-106
SB_8575| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 8e-37
SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 0.96
SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32) 29 2.9
SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06) 28 6.8
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 28 6.8
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004) 28 6.8
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 380 bits (934), Expect = e-106
Identities = 165/184 (89%), Positives = 179/184 (97%)
Frame = +1
Query: 127 DGETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSV 306
+GE FDDAVEER+INEEYKIWKKNTPFLYDLVMTHALEWPSLT QWLPDVT+P+GKDYSV
Sbjct: 70 EGEPFDDAVEERMINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTKPEGKDYSV 129
Query: 307 HRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINH 486
HRLILGTHTSDEQNH++IASVQLPN++AQFDASHYDNDKGEFGGF SVSGKIDIEIKINH
Sbjct: 130 HRLILGTHTSDEQNHVVIASVQLPNDEAQFDASHYDNDKGEFGGFASVSGKIDIEIKINH 189
Query: 487 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGL 666
EGEVNRAR+MPQNPC+IATKTPS+DVLVFDYTKHPSKP+P+GEC PDLRL+GH KEGYGL
Sbjct: 190 EGEVNRARFMPQNPCIIATKTPSADVLVFDYTKHPSKPDPNGECSPDLRLKGHTKEGYGL 249
Query: 667 SWNP 678
SWNP
Sbjct: 250 SWNP 253
Score = 35.9 bits (79), Expect = 0.034
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 680 NLNGYLLSASDDHTICL 730
N+NG LLSASDDHTICL
Sbjct: 254 NVNGNLLSASDDHTICL 270
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 481 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPEPSGECHPDLRL--RGHQ 648
+H+ E+ + ++ P N ++A+ + V+D +K E + + P+L GH
Sbjct: 363 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSAEDAEDGPPELLFIHGGHT 422
Query: 649 KEGYGLSWNPKP*WI 693
+ SWNP W+
Sbjct: 423 AKISDFSWNPNEPWV 437
>SB_8575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 151 bits (365), Expect = 8e-37
Identities = 67/73 (91%), Positives = 72/73 (98%)
Frame = +1
Query: 283 PDGKDYSVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKI 462
P+GKDYSVHRLILGTHTSDEQNH++IASVQLPN++AQFDASHYDNDKGEFGGF SVSGKI
Sbjct: 2 PEGKDYSVHRLILGTHTSDEQNHVVIASVQLPNDEAQFDASHYDNDKGEFGGFASVSGKI 61
Query: 463 DIEIKINHEGEVN 501
DIEIKINHEGEVN
Sbjct: 62 DIEIKINHEGEVN 74
>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = -3
Query: 295 PFRLAW*HRGATGQ*ARATPVHGSSPSRTEMVYFSSIFY 179
P+R A H GAT R+TP HGS+P R Y SI Y
Sbjct: 370 PYRGASPHHGATPY-RRSTPYHGSTPYRGSTPYRGSIPY 407
>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 YTKHPSKPEPSGEC-HPDLRLRGHQKEGYGLSW 672
Y P+ P P GE H D+ +RGH EG+ L +
Sbjct: 239 YAFTPTGPHPRGESLHEDIIMRGHSTEGFLLQF 271
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 289 GKDYSVHRLILGTHTSDEQNHLLIASVQLPNEDA--QFDASHYDND--KGEFGGFGSVSG 456
G+DY I+G +S + +H+L S +L +++ Q +A E G F +S
Sbjct: 2338 GEDYDALAKIVGHESSPDVSHVLQESSELSHDEGFQQVEADLVATKAVADESGDFAEMSS 2397
Query: 457 KIDIEIKINHEGEVNRAR 510
+ +E+ +NHE ++ R
Sbjct: 2398 ESVVEV-VNHEEDITEDR 2414
>SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)
Length = 639
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 424 GEF---GGFGSVSGKIDIEIKINHEGEVNRARYMPQNPCVIATKTPSSDV 564
GEF GG S +GK E+K++H E N + + + +TP+ DV
Sbjct: 566 GEFYYVGGVPSFNGKPSHEVKVDHNEEPNHHETLNYDQTLDYDETPNYDV 615
>SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 364 SVQLPNEDAQFDASHYDNDK--GEFGGFGSVSGKIDIEIKINHEGEVNRARYMPQNPCVI 537
SV P A+ +A Y+ D+ EFG S S + D+ + +V A Y+ P V
Sbjct: 2 SVFFPQITAKDEAGSYNKDELNFEFGDISSFSLQ-DLVEDMLEPTDVGLAEYLLNFPGVN 60
Query: 538 ATKTPSSDVLVFDYTKHPSKP 600
++TP DY H P
Sbjct: 61 CSQTPGIQEEKHDYFDHIEDP 81
>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
Length = 336
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 392 CASSLGSCTLAISK*FCSSDVCVPKISLCT 303
C S G CTL++ S+ +C K+ +CT
Sbjct: 18 CTLSGGVCTLSVGVFTLSAGICTLKVGVCT 47
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 337 DEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKID-IEIKINHEGEVNRARY 513
D+ + L+ +V ED+ F YD+ + E SGKI +IK +G ++R +
Sbjct: 679 DDDFYKLLPNVSKDCEDSSFPKGDYDSFEPELYRISDASGKIQKTQIK---KGRISRKDF 735
Query: 514 MPQNPCVIATKTP 552
Q+ + ++P
Sbjct: 736 DEQDESLDENRSP 748
>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
Length = 595
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 136 TFDDAVEERVINEEY---KIWKKNTPFLYDLVMTHAL 237
T D A E I Y KIW+ + P+LY M ++L
Sbjct: 261 TLDSAAETECIALHYSMSKIWEASEPYLYPFTMEYSL 297
>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 227 PMHWSGPRSLPSGSPMSPGQTERIIPYTDLS 319
PM S PRS + P+ P TERI T LS
Sbjct: 307 PMTISSPRSRKTSDPLPPLPTERIQSPTHLS 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,524,878
Number of Sequences: 59808
Number of extensions: 522320
Number of successful extensions: 1309
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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