Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8a01
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical p... 274 5e-74
AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical ... 274 5e-74
AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic mul... 274 5e-74
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 212 3e-55
Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical pr... 32 0.36
AF016430-10|AAB65374.1| 467|Caenorhabditis elegans Hypothetical... 30 1.5
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical pr... 29 2.6
>Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 274 bits (671), Expect = 5e-74
Identities = 119/179 (66%), Positives = 147/179 (82%)
Frame = +1
Query: 142 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLIL 321
D E+RV N+EYKIWKKNTPFLYDLVMTHALEWPSL+ QWLPDV + D D+++HRLIL
Sbjct: 6 DGTSEDRVANDEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPDVAK-DNSDHTIHRLIL 64
Query: 322 GTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVN 501
GTHTSDEQNHLLI+ + +P +DAQFDAS YD ++ E+GGFG+V+GK++ +I+INHEGEVN
Sbjct: 65 GTHTSDEQNHLLISKICMPTDDAQFDASRYDTERSEYGGFGAVNGKVEPDIRINHEGEVN 124
Query: 502 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNP 678
RARYMPQ +IATK+P +DV +FDY KH + P +P +RL+GH KEGYGLSWNP
Sbjct: 125 RARYMPQKSNIIATKSPHADVYIFDYLKHSAVPR-DNTFNPLIRLKGHTKEGYGLSWNP 182
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 481 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPEPSGECHPDLRL--RGHQ 648
+H E+ + ++ P N ++A+ + V+D +K E + + P+L GH
Sbjct: 307 SHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHT 366
Query: 649 KEGYGLSWNPKP*WI 693
+ SWNP W+
Sbjct: 367 AKISDFSWNPNEPWV 381
>AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 274 bits (671), Expect = 5e-74
Identities = 119/179 (66%), Positives = 147/179 (82%)
Frame = +1
Query: 142 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLIL 321
D E+RV N+EYKIWKKNTPFLYDLVMTHALEWPSL+ QWLPDV + D D+++HRLIL
Sbjct: 6 DGTSEDRVANDEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPDVAK-DNSDHTIHRLIL 64
Query: 322 GTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVN 501
GTHTSDEQNHLLI+ + +P +DAQFDAS YD ++ E+GGFG+V+GK++ +I+INHEGEVN
Sbjct: 65 GTHTSDEQNHLLISKICMPTDDAQFDASRYDTERSEYGGFGAVNGKVEPDIRINHEGEVN 124
Query: 502 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNP 678
RARYMPQ +IATK+P +DV +FDY KH + P +P +RL+GH KEGYGLSWNP
Sbjct: 125 RARYMPQKSNIIATKSPHADVYIFDYLKHSAVPR-DNTFNPLIRLKGHTKEGYGLSWNP 182
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 481 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPEPSGECHPDLRL--RGHQ 648
+H E+ + ++ P N ++A+ + V+D +K E + + P+L GH
Sbjct: 307 SHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHT 366
Query: 649 KEGYGLSWNPKP*WI 693
+ SWNP W+
Sbjct: 367 AKISDFSWNPNEPWV 381
>AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic
multivulva protein LIN-53 p48 protein.
Length = 417
Score = 274 bits (671), Expect = 5e-74
Identities = 119/179 (66%), Positives = 147/179 (82%)
Frame = +1
Query: 142 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLIL 321
D E+RV N+EYKIWKKNTPFLYDLVMTHALEWPSL+ QWLPDV + D D+++HRLIL
Sbjct: 6 DGTSEDRVANDEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPDVAK-DNSDHTIHRLIL 64
Query: 322 GTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIEIKINHEGEVN 501
GTHTSDEQNHLLI+ + +P +DAQFDAS YD ++ E+GGFG+V+GK++ +I+INHEGEVN
Sbjct: 65 GTHTSDEQNHLLISKICMPTDDAQFDASRYDTERSEYGGFGAVNGKVEPDIRINHEGEVN 124
Query: 502 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNP 678
RARYMPQ +IATK+P +DV +FDY KH + P +P +RL+GH KEGYGLSWNP
Sbjct: 125 RARYMPQKSNIIATKSPHADVYIFDYLKHSAVPR-DNTFNPLIRLKGHTKEGYGLSWNP 182
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 481 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK--HPSKPEPSGECHPDLRL--RGHQ 648
+H E+ + ++ P N ++A+ + V+D +K E + + P+L GH
Sbjct: 307 SHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHT 366
Query: 649 KEGYGLSWNPKP*WI 693
+ SWNP W+
Sbjct: 367 AKISDFSWNPNEPWV 381
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 212 bits (517), Expect = 3e-55
Identities = 92/171 (53%), Positives = 129/171 (75%), Gaps = 2/171 (1%)
Frame = +1
Query: 169 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDYSVHRLILGTHT-SDEQ 345
++E++IWKKN P+LYD V+T +EWPSL+ QW+PDVT+ + D S+HR+I GTHT Q
Sbjct: 11 SKEHRIWKKNVPYLYDTVVTKEVEWPSLSVQWMPDVTKTENSDSSMHRMIHGTHTCGGVQ 70
Query: 346 NHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVS-GKIDIEIKINHEGEVNRARYMPQ 522
NHL+I+ + + +FD + +D+++ EFGG+G S K D EIKINH GEV+RARYMP
Sbjct: 71 NHLMISKFTITTDTPEFDDAKWDSEREEFGGYGEGSAAKWDTEIKINHPGEVHRARYMPH 130
Query: 523 NPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWN 675
NP +IA++ PS DV +FDYTKHPS+P+ + + P LRL+GH+ EGYG+SW+
Sbjct: 131 NPFIIASRGPSDDVYIFDYTKHPSEPKDT-KFRPQLRLKGHEGEGYGMSWS 180
>Z78542-2|CAB01744.2| 641|Caenorhabditis elegans Hypothetical
protein F20D1.2 protein.
Length = 641
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 247 SLTAQWLPDVTRPDGKDYSVHRLILGTHTSDEQNHL 354
+ T +++P TRPD + + + RL+L H NHL
Sbjct: 135 AFTTKYIPKDTRPDAQIFDLFRLLLQYHDPQISNHL 170
>AF016430-10|AAB65374.1| 467|Caenorhabditis elegans Hypothetical
protein C05C8.7 protein.
Length = 467
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 271 DVTRPDGKDYSVHRLILGTHTSDEQ 345
D+ PD KD+ +HR+ +GTH + E+
Sbjct: 336 DMYAPDCKDFQLHRIRVGTHQTVEE 360
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 193 KNTPFLYDLVMTHALEWPSLTAQWLPDVTRP 285
K P D + H +EW L +W+ D RP
Sbjct: 606 KTIPATKDELFVHRIEWDQLDGKWMNDRIRP 636
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 193 KNTPFLYDLVMTHALEWPSLTAQWLPDVTRP 285
K P D + H +EW L +W+ D RP
Sbjct: 606 KTIPATKDELFVHRIEWDQLDGKWMNDRIRP 636
>Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical
protein W04D2.6b protein.
Length = 547
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 193 KNTPFLYDLVMTHALEWPSLTAQWLPDVTRP 285
K P D + H +EW L +W+ D RP
Sbjct: 448 KTIPATKDELFVHRIEWDQLDGKWMNDRIRP 478
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,423
Number of Sequences: 27780
Number of extensions: 394177
Number of successful extensions: 1092
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -