Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p23
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    27   2.1  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   8.5  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   8.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.5  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 408 TFPLIAQRTNIVLLYLFLLLEMPISIYYR 494
           T P +   TN+  LY  +L+E P++ Y++
Sbjct: 133 TLPALCVATNVEELYSVVLIETPLAPYFK 161


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 376 NIKSCLKYVFLLVSDRSNLLLCSFYVTNDRKY*IMFWR 263
           N  SC  YV  + + R  L L S  +    ++  MFW+
Sbjct: 210 NGSSCCAYVASIANRRLVLCLLSSLINTAMRFNTMFWK 247


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 191 EKKVLKHFYFQTNNNYG 241
           EK+ L+H++FQ  N  G
Sbjct: 13  EKRALRHYFFQLQNRSG 29


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 343  LVSDRSNLLLCSFYVTNDRKY*IMFWRFVTLLLGAIVVISLKVKVFQN 200
            ++ D SNLL     V    KY + F R V L+L  +  ISL+   F N
Sbjct: 1791 ILDDESNLLRLMSLV---EKYSLPFLRRVALVLYCMFDISLEFNEFSN 1835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,223
Number of Sequences: 5004
Number of extensions: 38746
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)