Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p22
         (441 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   3.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   6.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.9  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    20   9.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 271 NFQGPQRVSGHRRKC 227
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615



 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 143 PDLSAASSGHFGLPRRTLVFKDEG 72
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 271 NFQGPQRVSGHRRKC 227
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 189 RIPWNSNAQAEKKTLPGPLG 130
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -2

Query: 284 HPSPEFSRSAESIRTPPQMRCSSRSE-----PYLPSIGFH 180
           HP    S+ + +   PPQ+  + R E     P +P + F+
Sbjct: 217 HPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPYVPFY 256


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 317 YGYEPARHLHVHPSPEFSRSAESIR 243
           + Y P  H   +P+P +   A+  R
Sbjct: 76  WNYSPDNHFEQYPNPTYYNLADPAR 100


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 259 DLENSGEGCTWRCRAGSYPYPQQVS 333
           D  N G+G + +C      YP  +S
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNIS 637


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 29  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 139
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 29  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 139
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 313 GTNRRDISTYIPHLNFQGPQRVS 245
           G  R D  T+ PH     PQ+ S
Sbjct: 339 GIERADSVTWNPHKLLTAPQQCS 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,378
Number of Sequences: 336
Number of extensions: 2459
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)