Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p10
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   0.57 
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   4.0  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   7.0  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   7.0  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   9.3  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    25   9.3  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    25   9.3  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 382 IEFSFNFSATFLSDSSFGTSKTTLCILSKSFKYCIVC 272
           +E S   S  + +D+S G S    C+L     +CI+C
Sbjct: 172 VEMSSALSNIYNTDASDGDSSDDSCLLEDEEDFCIIC 208


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 147 VTVQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDE 272
           +TV Y+    + L E GWSI  +  Q+ +       + +DDE
Sbjct: 49  LTVPYVQELVNPLDEIGWSIVQVQTQSSYIGWGTGSLKRDDE 90


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 382 IEFSFNFSATFLSDSSFGTSKTTLCI 305
           I+  FN  +TF+ +  +G +K+TL I
Sbjct: 171 IQIPFNLYSTFVIEEKYGFNKSTLKI 196


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 360  EKLKENSILHKLWIEQPENI 419
            E L   S  H++WIE PE +
Sbjct: 1057 ELLPTTSSYHEIWIEDPETV 1076


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 325 SKTTLCILSKSFKYCIVCSS 266
           S T L +  K+ KYC VC+S
Sbjct: 620 SVTMLLLSQKAAKYCAVCNS 639


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 234 ASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVA 359
           A+S +    +   HT  Y+  L+    ++ +VP E S  KVA
Sbjct: 3   ATSFLHQAKQQPHHTEPYIKALEAREYIIEQVPEELSKPKVA 44


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 DLDNMHKVVLEVPNEESLRKVAEKLKENSILH 389
           DL  +H++  +VP ++   ++A   KE  I H
Sbjct: 132 DLWQLHRIDPKVPRKDQFSEIAAMKKEGLIRH 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,436
Number of Sequences: 5004
Number of extensions: 43975
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)