Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p10
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1071 + 30585106-30585288,30585737-30585919                       80   1e-15
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685...    30   1.0  
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371...    30   1.3  
05_04_0310 + 20114415-20117819                                         29   1.8  
03_05_1030 - 29844628-29845059,29845161-29845245,29845989-298460...    29   1.8  
10_08_0531 + 18576913-18578058,18578724-18578843,18578924-185789...    28   4.1  
02_03_0217 + 16512689-16512838,16514353-16515444                       27   7.1  

>04_04_1071 + 30585106-30585288,30585737-30585919
          Length = 121

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 46/113 (40%), Positives = 61/113 (53%)
 Frame = +3

Query: 144 NVTVQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVL 323
           +V VQY++LR DL     W +G++VAQ CHA+ A                       V L
Sbjct: 29  DVVVQYVVLRRDLAD--AWPLGSVVAQGCHAAVAA----------------------VTL 64

Query: 324 EVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYPKEEVKNMLANL 482
           EV  E  L+ +AEKL+   + HK+WIEQPENIPTC+A  P PK +V +    L
Sbjct: 65  EVKGETQLKNLAEKLETAGVRHKVWIEQPENIPTCIATAPCPKSQVSSFFKKL 117


>05_02_0125 -
           6852470-6852481,6852641-6853086,6853178-6853781,
           6853970-6854187,6854283-6854437,6854561-6854772
          Length = 548

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -1

Query: 412 SGCSIHNLCNIEFS--FNFSATFLSDSSFGT-SKTTLCILSKSFKYCIV--CSSS 263
           S C+IH++CN EF    +     +S +SFG   +    IL  S  Y  +  CSSS
Sbjct: 249 SNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSSCSSS 303


>08_01_0418 -
           3716226-3716279,3716531-3716581,3716656-3716751,
           3717037-3717194,3717303-3717417,3717511-3717564,
           3717843-3717950,3718494-3718583,3718818-3718856,
           3718993-3719172,3719264-3719576,3719659-3719834
          Length = 477

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/81 (28%), Positives = 40/81 (49%)
 Frame = +3

Query: 225 ACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWIE 404
           A  A++  ++  K++ H   Y+  + N+  V +   N+  L K+A+   ENS L    +E
Sbjct: 205 ALRANATAINDKKEETHRKFYIVLVRNVRSVQI-AKNDFELVKLAQ---ENSKLLPKIVE 260

Query: 405 QPENIPTCLAIKPYPKEEVKN 467
            PE +   L  K   + E+KN
Sbjct: 261 SPEKLQRALEEKKTARAELKN 281


>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
 Frame = +3

Query: 216 VAQACHASSAV-MHIYKDDEHTIQYLNDLDNMHKVV----LEV--PNEESLRKVAEKLKE 374
           + +  H   ++  H+ K+  HT++ LND++++ + +    L+V    EE+ +    K + 
Sbjct: 687 IGKMIHLQGSIEFHVKKEKGHTLEDLNDMNDLRRKLHIKNLDVVASKEEASKAGLSKKQS 746

Query: 375 NSILHKLWIEQPENIPTCLA-----IKPYPKEE 458
             +L   W    +++P+  A     +KP+P  E
Sbjct: 747 IKVLELEWNSPGKSVPSVDAEVLEGLKPHPDVE 779


>03_05_1030 -
           29844628-29845059,29845161-29845245,29845989-29846087,
           29846478-29846566,29847583-29847633
          Length = 251

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
 Frame = +3

Query: 198 WSIGALVAQ-ACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAE---K 365
           WS+  LV    C  + AV+  ++ +  T+QYL++   +   +L+  N   + + A    K
Sbjct: 25  WSLFMLVRNWECRLACAVLECHRFNLETVQYLDENKQLILAILDNQNNGKVEECARNQAK 84

Query: 366 LKENSI-LHKLWIEQPENIPTCLAIKPYP 449
           L+ N + L  +   QP   P   A+  YP
Sbjct: 85  LQHNLMYLAAIADSQP---PQTAAMSQYP 110


>10_08_0531 +
           18576913-18578058,18578724-18578843,18578924-18578970,
           18579588-18579630
          Length = 451

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 387 HKLWIEQPENIPTCLAIKPYPKEEVKN 467
           HK W++ PE +  C     +P E+++N
Sbjct: 394 HKAWMKSPEVLENCSTGLHFPAEQIEN 420


>02_03_0217 + 16512689-16512838,16514353-16515444
          Length = 413

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 279 IQYLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWI--EQPENIPTCLAIKPYPK 452
           ++ L  L  +HK+ L   N+E+ + V   +   S+LH L +  E  + +  CL  K  P 
Sbjct: 195 LRELEKLTKLHKLGLTGVNKENSQAVMSVIANLSLLHSLSLRAEGDQGLQGCLDHKFSPP 254

Query: 453 EEVKNM 470
            +++++
Sbjct: 255 SKLQSL 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,039
Number of Sequences: 37544
Number of extensions: 228678
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)