Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p07
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    37   0.41 
UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice ...    35   2.2  
UniRef50_Q9KBJ6 Cluster: BH1931 protein; n=5; Bacillus|Rep: BH19...    34   3.8  
UniRef50_Q468F5 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  

>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -3

Query: 667 ITARGVRYKSATAYCD*TLPVK-WSLISRSHEYNYVLNNDSTELCQETSCGVGVLLFLHT 491
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L  H 
Sbjct: 391 VTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYLD-HG 449

Query: 490 ARSRR*LMQQTSESRIRAVMTASMRMIAPVFS 395
           A              + +V T  +  + P FS
Sbjct: 450 AGKLAFYSVSDGMKLLHSVQTRFLEPLYPAFS 481


>UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Tripartite motif protein 16; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Tripartite motif protein 16 - Takifugu rubripes
          Length = 446

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 667 ITARGVRYKSATAYCD*TLPVK-WSLISRSHEYNYVLNNDSTELCQETSCGVGVLL 503
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 360 VTYRGIRRKGNGNECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 415


>UniRef50_Q9KBJ6 Cluster: BH1931 protein; n=5; Bacillus|Rep: BH1931
           protein - Bacillus halodurans
          Length = 304

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 520 GVGVLLFLHTARSRR*LMQQTSESRIRAVMTASMRMIAPVFSTSTSRNISKARGFII 350
           G G+   ++TA S++ L QQ SE+ +  V + S   + P+F       +++ RG I+
Sbjct: 155 GAGLSFAVYTAASKKLLQQQPSEAVVAVVFSLSALFLVPLFFLYDLSWLTEFRGIIV 211


>UniRef50_Q468F5 Cluster: Putative uncharacterized protein; n=1;
           Methanosarcina barkeri str. Fusaro|Rep: Putative
           uncharacterized protein - Methanosarcina barkeri (strain
           Fusaro / DSM 804)
          Length = 101

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 640 SATAYCD*TLPVKWSLISRSHEYNYVLNNDSTELCQET 527
           S   Y   T+   W+ ++  ++YNY L+NDS  L ++T
Sbjct: 17  SPEEYSTTTVVFYWNSLNNKYDYNYFLSNDSNHLVKDT 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,707,091
Number of Sequences: 1657284
Number of extensions: 8816728
Number of successful extensions: 19139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19137
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)