Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p07
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    29   4.7  
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    28   8.1  

>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 559 LEHNYTREIVRLMTTLPVTSNRNTLS 636
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 656 WRSVQECDSVLRLDVTGKVVINLTISRV*LCSKQRFHGTMPGNILRRRCL 507
           W S QE D V    VT K+V  +T SR         HGTM  ++  +RCL
Sbjct: 249 WVS-QEFDVV---GVTAKIVEAITRSRPDCSELSALHGTMVEHLTGKRCL 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,909
Number of Sequences: 37544
Number of extensions: 236772
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)