Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p01
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454...    77   5e-28
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812...    79   4e-15
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489...    78   6e-15
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552...    32   0.40 
09_02_0575 + 10845261-10847057                                         31   0.70 
07_03_0510 - 18908224-18908247,18909075-18909347                       30   1.6  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   8.7  

>11_06_0498 -
           24344454-24344660,24344840-24344944,24345324-24345407,
           24345523-24345615,24345795-24345920,24347157-24347315,
           24347398-24347475,24348316-24348375,24349433-24349555,
           24349961-24350041
          Length = 371

 Score = 77.4 bits (182), Expect(2) = 5e-28
 Identities = 37/82 (45%), Positives = 51/82 (62%)
 Frame = +1

Query: 472 IDWLMGWQFCDGIGVLGNCKAYAKKSIQYLPPIGWMWKFSEFVFLERSFEKDKEIIKKQI 651
           +DW   W      G LG+  A  KKS ++LP IGW   F+E++FLERS+ KD++ +K  +
Sbjct: 61  VDW---WAGVKRSGCLGSTLAVMKKSSKFLPVIGWSMWFAEYLFLERSWAKDEKTLKWGL 117

Query: 652 SELCDYPDPVWLLLTPEGTRYT 717
             L D+P P WL L  EGTR+T
Sbjct: 118 QRLKDFPRPFWLALFVEGTRFT 139



 Score = 65.3 bits (152), Expect(2) = 5e-28
 Identities = 25/60 (41%), Positives = 43/60 (71%)
 Frame = +1

Query: 202 IVHLCFAISYFTSGLLLNFVQAILYFGLKPFNKKLYRQINYYLSYSFYSQLVFMAEWWAG 381
           +V L   + +  SGL++N +QA+L+  ++PF+K LYR+IN +L+   + QLV++ +WWAG
Sbjct: 7   LVVLPLGLLFLLSGLIINAIQAVLFLSIRPFSKSLYRRINRFLAELLWLQLVWLVDWWAG 66


>05_05_0387 +
           24577448-24577638,24580375-24580767,24581078-24581208,
           24581460-24581899
          Length = 384

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 38/96 (39%), Positives = 54/96 (56%)
 Frame = +1

Query: 433 KEHGYLIMNHSYEIDWLMGWQFCDGIGVLGNCKAYAKKSIQYLPPIGWMWKFSEFVFLER 612
           KE   L  NH  E+DW+  W      G L   K   KKS+  LP   W +   EF+ +ER
Sbjct: 101 KERVLLFANHRTEVDWMYLWDLALRKGRLQCIKYILKKSLMKLPIFNWAFHIIEFIPVER 160

Query: 613 SFEKDKEIIKKQISELCDYPDPVWLLLTPEGTRYTK 720
            +E D+ +I+ ++SEL +  DP+WL + PEGT YT+
Sbjct: 161 KWEVDEPLIRSRLSELKNPKDPLWLAVFPEGTDYTE 196


>01_06_0932 -
           33147656-33148098,33148631-33148675,33148815-33148945,
           33149192-33149817
          Length = 414

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 38/101 (37%), Positives = 53/101 (52%)
 Frame = +1

Query: 418 EKFYGKEHGYLIMNHSYEIDWLMGWQFCDGIGVLGNCKAYAKKSIQYLPPIGWMWKFSEF 597
           E    K+   L  NH  E+DW+  W      G LG  K   K S+  LP   W +   EF
Sbjct: 110 ESVLPKKRVLLFANHRTEVDWMYLWDLALRKGYLGYIKYILKSSLMKLPVFSWAFHIFEF 169

Query: 598 VFLERSFEKDKEIIKKQISELCDYPDPVWLLLTPEGTRYTK 720
           + +ER +E D+ II+ ++S   D  DP+WL + PEGT YT+
Sbjct: 170 IPVERKWEIDEAIIQNKLSAFKDPRDPLWLAVFPEGTDYTE 210


>07_03_0696 -
           20754773-20754821,20754930-20755028,20755107-20755226,
           20755317-20755402,20756013-20756109,20756181-20756268,
           20756358-20756454,20756797-20756892,20757029-20757125,
           20757571-20757689,20758559-20758616,20758751-20758857
          Length = 370

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 598 VFLERSFEKDKEIIKKQISELCDYPDPVWLLLTPEGT 708
           ++  R+  KD+E++ K++ +   +PD   LL+ PEGT
Sbjct: 205 IWFNRNDLKDREVVAKKLRDHVQHPDSNPLLIFPEGT 241


>09_02_0575 + 10845261-10847057
          Length = 598

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 654 RYLLLDNFLIFFKRSF*KYEF*KFPHPANR 565
           RYL L+NF I F++++ K++F K P P  R
Sbjct: 520 RYLSLENFEIEFRKTYAKHKFFKVPDPKLR 549


>07_03_0510 - 18908224-18908247,18909075-18909347
          Length = 98

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 28  VSVRFSGLNSEFHLNN*SNTSTIGNPWLTVLGY 126
           VSV FSG   + HL      +T+GN W TV GY
Sbjct: 60  VSVMFSGHLGDVHLAG----ATLGNSWATVTGY 88


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 538 AKKSIQYLPPIGWMWKFSEFVF--LERSFEKDKEIIKKQISELCDYPDPVWL-LLTPEGT 708
           A K++++L  +  + K S   F   +   +K   +   QISE C Y DP+   L+ P   
Sbjct: 692 AVKAMKHLRTLVLIGKHSSLFFQSFKDVVQKGHHLRLLQISETCTYVDPLLCNLVNPAHI 751

Query: 709 RYTK 720
           RY K
Sbjct: 752 RYMK 755


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,683
Number of Sequences: 37544
Number of extensions: 328536
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)