Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7p01
         (725 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    27   0.59 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   3.2  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 316 INYYLSYSFYSQLVFMAEWWAGSTMSLYVKKDEYEKFYGKEHGY 447
           I+  L Y F+++ +  A +    + S  ++K  +E +YGK+  Y
Sbjct: 194 IDAKLGYRFWAEAINAAVYLQNISSSRSIEKTPFELWYGKQPDY 237


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -2

Query: 475 LFHNCGS*LNIHVLFHKTFRIHLF--LHITTWLTQPTILP*ILIDCKMNMKDNNLFAYTI 302
           +F   G+ ++I  +  +   + LF  L + T L    +LP + +  ++     NLFA TI
Sbjct: 329 IFIATGTQVHIAWVSRRVASLQLFCRLKVQTSLASEALLPRLPLPGRIKALIGNLFAQTI 388

Query: 301 FC*TV*VQSIKSPVQSSTA 245
            C    ++S++  V    A
Sbjct: 389 RCCVPDLKSLREFVSRPPA 407


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,405
Number of Sequences: 2352
Number of extensions: 13740
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)