Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7o20
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    31   1.3  
02_01_0642 - 4803464-4805665,4806231-4806320                           30   1.7  
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148...    29   5.1  

>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = +3

Query: 369 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 548
           G+I  L  K     + L +  E    F N+L          N + +E R+ET QLA    
Sbjct: 74  GIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKT----QNNLRDELRKETVQLARENL 129

Query: 549 DIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRS 674
           +  Q ++   N   ++ +  + A   ++ A L  QK  + RS
Sbjct: 130 EKEQRILELRNQCTIIRTTELAA-AQDRLAELERQKDEIMRS 170


>02_01_0642 - 4803464-4805665,4806231-4806320
          Length = 763

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +3

Query: 351 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 530
           K+++    ++E + +L+     LAE N +++     L +    LVQ  T L +  +    
Sbjct: 475 KVESIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQT 534

Query: 531 LANRM 545
           L N++
Sbjct: 535 LQNKL 539


>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
            35714942-35715135,35715237-35716786,35716946-35717049,
            35717258-35717399,35717692-35717910
          Length = 1535

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 78   NCKQAVIVNVDKKYKTTY-SESGSIPYTP 161
            N +QA I+  D KY  ++ ++ GS+PY P
Sbjct: 1270 NSEQAAIITEDVKYTESFLNKPGSLPYAP 1298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,625
Number of Sequences: 37544
Number of extensions: 457646
Number of successful extensions: 1292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)