Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7o16
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 208 IMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNED-MERKIQFV 348
           I+ K   +   +  R+  +  Q   +    KCK+I NED  E+  Q V
Sbjct: 68  ILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKSIQNEDPCEKAYQLV 115


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 220 DITFVVIIRRRTLYYFFNLIVPCV 243


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = +1

Query: 97  KMHLSLRLLSNRHPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPF 270
           K   S +     + S  A  + ++ + +   C L  +   +  LL  +  T   EKPF
Sbjct: 14  KKSFSCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPF 71


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 183 DVTFTIQIRRRTLYYFFNLIVPCV 206


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 251 DVTFTIQIRRRTLYYFFNLIVPCV 274


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  DLRFCNTIRIESLEFFYPITVKCI 106
           D+ F   IR  +L +F+ + V C+
Sbjct: 251 DVTFTIQIRRRTLYYFFNLIVPCV 274


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 277 RRRVNHEKCKAIYNEDMERKIQFVLRKNRHEPF 375
           RRRV  ++     NE+++R  +F    +   PF
Sbjct: 475 RRRVAVDRSGIDINEEIQRNREFYKNADVRPPF 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,503
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)