Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7o15
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 291 4e-79
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 61 6e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 61 6e-10
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 58 5e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 58 5e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 58 5e-09
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 40 0.001
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 37 0.012
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 37 0.012
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 34 0.11
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.19
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.26
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.59
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 31 0.59
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.4
AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 291 bits (713), Expect = 4e-79
Identities = 141/192 (73%), Positives = 156/192 (81%), Gaps = 1/192 (0%)
Frame = +3
Query: 120 MASN-EGRTTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAI 296
MAS E QS L +QDL K+ V L+ L+ EVISRQATINIGTIGHVAHGKST+VKA
Sbjct: 1 MASEAEKDKCQSWLAKQDLDKVGVDNLNPLTEEVISRQATINIGTIGHVAHGKSTLVKAF 60
Query: 297 SGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACT 476
SGV TV+FK ELERNITIKLGYANAKIY+C N +CPRP + S GSS D FPC R C
Sbjct: 61 SGVHTVKFKRELERNITIKLGYANAKIYRCSNQECPRPGCYRSAGSSTPDRFPCERAGCG 120
Query: 477 GRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 656
G F VRHVSFVDCPGHDILMATMLNGAAVMDAA LL+AGNE CPQPQTSEHLAA+EIM+
Sbjct: 121 GEFTCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEPCPQPQTSEHLAAVEIMQ 180
Query: 657 LKHILILQNKID 692
L H++ILQNK+D
Sbjct: 181 LNHLMILQNKVD 192
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 61.3 bits (142), Expect = 6e-10
Identities = 48/152 (31%), Positives = 71/152 (46%)
Frame = +3
Query: 237 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 416
+N+GTIGH+ HGK+T+ AI+ VQ K G+A K + D
Sbjct: 46 VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGFA--KHIKFDE-------- 82
Query: 417 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 596
I G + + A G +R S DCPGH + M+ G + MD A+L+IA
Sbjct: 83 -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
Query: 597 NESCPQPQTSEHLAAIEIMKLKHILILQNKID 692
+ + QT EHL + + +K++ I NK D
Sbjct: 142 TDGVME-QTKEHLILAKQVGVKNMAIFINKAD 172
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 61.3 bits (142), Expect = 6e-10
Identities = 48/152 (31%), Positives = 71/152 (46%)
Frame = +3
Query: 237 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 416
+N+GTIGH+ HGK+T+ AI+ VQ K G+A K + D
Sbjct: 46 VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGFA--KHIKFDE-------- 82
Query: 417 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 596
I G + + A G +R S DCPGH + M+ G + MD A+L+IA
Sbjct: 83 -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
Query: 597 NESCPQPQTSEHLAAIEIMKLKHILILQNKID 692
+ + QT EHL + + +K++ I NK D
Sbjct: 142 TDGVME-QTKEHLILAKQVGVKNMAIFINKAD 172
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +3
Query: 495 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH-LAAIEI-MKLKHI 668
RH + +DCPGH + M+ GAA M+ A+L++A + P PQT EH L A ++ + L +I
Sbjct: 112 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG-PMPQTREHLLLARQVGVPLDNI 170
Query: 669 LILQNKID 692
++ NK+D
Sbjct: 171 VVFMNKVD 178
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 237 INIGTIGHVAHGKSTVVKAISGV 305
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 50 LNVGTIGHVDHGKTTLTSAITKI 72
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +3
Query: 495 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH-LAAIEI-MKLKHI 668
RH + +DCPGH + M+ GAA M+ A+L++A + P PQT EH L A ++ + L +I
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG-PMPQTREHLLLARQVGVPLDNI 171
Query: 669 LILQNKID 692
++ NK+D
Sbjct: 172 VVFMNKVD 179
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 237 INIGTIGHVAHGKSTVVKAISGV 305
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKI 73
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +3
Query: 495 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH-LAAIEI-MKLKHI 668
RH + +DCPGH + M+ GAA M+ A+L++A + P PQT EH L A ++ + L +I
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG-PMPQTREHLLLARQVGVPLDNI 171
Query: 669 LILQNKID 692
++ NK+D
Sbjct: 172 VVFMNKVD 179
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 237 INIGTIGHVAHGKSTVVKAISGV 305
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKI 73
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +3
Query: 495 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILI 674
R ++ +DCPGH L+ +L + V D A+++I QPQT+EHL ++I
Sbjct: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGI-QPQTAEHLLLASKFCPNRVII 130
Query: 675 LQNKID 692
+ NK D
Sbjct: 131 VLNKCD 136
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 210 PEVISRQATINIGTIGHVAHGKSTVVKAIS 299
P S +N+G +GHV GK+T+ + I+
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 495 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQP------QTSEHLAAIEIMK 656
RH + +D PGH + M+ GA D A+L+I+ + QT EH ++
Sbjct: 187 RHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAG 246
Query: 657 LKHILILQNKID 692
+KH++IL NK+D
Sbjct: 247 VKHLVILVNKMD 258
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 40.3 bits (90), Expect = 0.001
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 14/208 (6%)
Frame = +3
Query: 111 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVV 287
T S+E T +Q Q+++K P V + IN+ +GHV GKST++
Sbjct: 129 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 187
Query: 288 -------KAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 446
+ + +FK+E RN K +A A + + R + G +S +
Sbjct: 188 GHLLHDLEVVDSRTIDKFKHEAARNG--KASFAYAWVLDETEEERERGVTMDIGRTSFET 245
Query: 447 SFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQP--- 617
S R + +D PGH ++ M+ G + DAA+L++ +
Sbjct: 246 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFE 291
Query: 618 ---QTSEHLAAIEIMKLKHILILQNKID 692
QT EH + + + +++ NK+D
Sbjct: 292 NGGQTKEHALLLRSLGVTQLIVAVNKLD 319
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 40.3 bits (90), Expect = 0.001
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 14/208 (6%)
Frame = +3
Query: 111 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVV 287
T S+E T +Q Q+++K P V + IN+ +GHV GKST++
Sbjct: 147 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 205
Query: 288 -------KAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 446
+ + +FK+E RN K +A A + + R + G +S +
Sbjct: 206 GHLLHDLEVVDSRTIDKFKHEAARNG--KASFAYAWVLDETEEERERGVTMDIGRTSFET 263
Query: 447 SFPCLRPACTGRFQLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQP--- 617
S R + +D PGH ++ M+ G + DAA+L++ +
Sbjct: 264 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFE 309
Query: 618 ---QTSEHLAAIEIMKLKHILILQNKID 692
QT EH + + + +++ NK+D
Sbjct: 310 NGGQTKEHALLLRSLGVTQLIVAVNKLD 337
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +3
Query: 498 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 659
+++ +D PGH + M+ G + D A+L++A QT EH + + +
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
Query: 660 KHILILQNKID 692
K +++ NK+D
Sbjct: 146 KQLIVACNKMD 156
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +3
Query: 498 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 659
+++ +D PGH + M+ G + D A+L++A QT EH + + +
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
Query: 660 KHILILQNKID 692
K +++ NK+D
Sbjct: 146 KQLIVACNKMD 156
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +3
Query: 495 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILI 674
R V+F+D PGH + GA D +L++A ++ + QT++ + + ++ +++
Sbjct: 204 RRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-QTAQSIKFAKDANVQ-LVV 261
Query: 675 LQNKID 692
NKID
Sbjct: 262 AVNKID 267
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 207 SPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 308
SP+ + R+ I + +GHV HGK+T++ A+ Q
Sbjct: 148 SPKDLERRPPI-VTIMGHVDHGKTTLLDAMRNSQ 180
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 501 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQ 680
++ +D PGH A + AV D LLL+A N+ + A E K I+ +
Sbjct: 104 LNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQTIANFWLAFE--KNIQIIPVI 161
Query: 681 NKID 692
NKID
Sbjct: 162 NKID 165
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 498 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNE-SCPQPQTSE 629
+++ +D PGH + M+ G + D A+L++A N+ +P SE
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVACNKMDSTEPPFSE 130
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.59
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 495 RHVSFVDCPGHDILMATMLNGAAVMDAALLL 587
R ++ +DCPGH L+ +L + V D A+++
Sbjct: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 210 PEVISRQATINIGTIGHVAHGKSTVVKAIS 299
P S +N+G +GHV GK+T+ + I+
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +3
Query: 498 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 659
+++ +D PGH + M+ G + D A+L++A QT EH + + +
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
Query: 660 KHILILQN 683
K ++ L++
Sbjct: 146 KQLVSLRS 153
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 510 VDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKI 689
+D PGH+ G+++ D A+L++ +PQT E L + K ++ L NKI
Sbjct: 554 IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGL-EPQTIESLKLLIKGKTPFVIAL-NKI 611
Query: 690 D 692
D
Sbjct: 612 D 612
>AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical
protein Y39A3CR.6 protein.
Length = 345
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 396 KCPRPTSFISGGSSKDDSFPCLRPACTGR 482
K P+SF+S GSS + P ++P T R
Sbjct: 240 KVSSPSSFLSPGSSTSSTVPNVKPTVTRR 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,395,953
Number of Sequences: 27780
Number of extensions: 316940
Number of successful extensions: 848
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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