Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7o13
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.2  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    25   7.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   7.4  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   7.4  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   7.4  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   9.8  

>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
 Frame = +3

Query: 84  MMSLKMSARQAIKVGTKTVKPVLSSSHAEARNRVLS------LYKA----WYRQIPYIVK 233
           +  + +   +AIKV  +T  P  +++  EA +++++      LY+     W+RQIPY + 
Sbjct: 133 LADIMLCPMEAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLAPLWFRQIPYTMM 192

Query: 234 DY 239
            +
Sbjct: 193 KF 194


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +3

Query: 153  SSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDIRVIDM 332
            + S+AE  N  LSL K WY +   ++ D  +  S+ +C   + EL  +   VTD    ++
Sbjct: 2733 AESYAETNN--LSLIKVWYHEACRVLLDRLV--SQKECSWGMTEL--QKVIVTDFGEFEV 2786

Query: 333  LVI 341
             VI
Sbjct: 2787 SVI 2789


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 400 WPTSNQQKNLNQKISFRNSFLEMNDLYI 483
           WPT++   N N  I ++N    +  LY+
Sbjct: 186 WPTTDADMNDNDDIGYQNLANSLGKLYV 213


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -3

Query: 401  HNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFFQFLSTLCF*LGNVIIL 231
            +N  LL  + H    + +  NN  +  S I   FVLN+ F   L+T+C  LGN++ L
Sbjct: 1586 YNAYLLDFFTHGSVDMLIEQNN--LKQSEI--WFVLND-FSLVLATICSCLGNLLNL 1637


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 416 WFEVGHNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFF 279
           W E+       +  + RL+   L+    HI     S   VL EE++
Sbjct: 102 WIELWDLESRTWDLIQRLYSFRLSEQQGHIQSHAFSSRAVLEEEYY 147


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 42  ENVQRVYNHYVIMKMMSLKMSARQAIKVGTKTV 140
           ENV R+Y+    +  M      R A  +GTKTV
Sbjct: 725 ENVSRIYHMAAEVHWMKSYQELRPANVLGTKTV 757


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 143 FYGFCTNFYCLPCRHFQRHHFHYNVVIIYSLD 48
           FYG  TN+    CRH       +   + Y+L+
Sbjct: 474 FYGLTTNYLLAHCRHMHGEKIPHPNGLEYTLE 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,945
Number of Sequences: 5004
Number of extensions: 48708
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)