Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7o13
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.51 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   8.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 8/40 (20%), Positives = 19/40 (47%)
 Frame = +3

Query: 30  LIHFENVQRVYNHYVIMKMMSLKMSARQAIKVGTKTVKPV 149
           + HF + +  +NH+ +M+ +   ++    I  G     P+
Sbjct: 294 IFHFAHPREEFNHWTVMRCVQAMIAGIVVISAGADAYPPL 333



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 490 VQSLKLLNLSNEYINVNLKKK 552
           +QSL L N+  E+  + +K+K
Sbjct: 254 LQSLSLTNIQLEHFEMKIKRK 274



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 501 QALYKVNIQIIHFQKRISK 445
           Q+L   NIQ+ HF+ +I +
Sbjct: 255 QSLSLTNIQLEHFEMKIKR 273


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +3

Query: 192 LYKAWYRQIPYIVKDYDI-----PKS---EAQCREKLKELFIKNKHVTDIRVIDMLVIKG 347
           +YK++   I    KD ++     PKS   E  C  K  E+F       D   +   V KG
Sbjct: 453 MYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKG 512

Query: 348 QMELKESVN 374
           Q+ LKE  N
Sbjct: 513 QICLKEKEN 521


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 416 WFEVGHNVPLLFPYV 372
           ++EVG NVP  F ++
Sbjct: 310 YYEVGSNVPFNFKFI 324


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 397 LWPTSNQQKNLNQKISFRNS 456
           +WP    Q N N   +F+NS
Sbjct: 150 IWPFKEYQMNGNNITNFKNS 169


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
          opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 86 HFHYNVVIIYSL 51
          HFH  + IIYS+
Sbjct: 55 HFHIGLAIIYSM 66


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 86 HFHYNVVIIYSL 51
          HFH  + IIYS+
Sbjct: 55 HFHIGLAIIYSM 66


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 379 GNKRGTLWPTSNQQKNLNQKI 441
           G  +GT +P +   K   QK+
Sbjct: 144 GELKGTFYPLTGMSKETQQKL 164


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 379 GNKRGTLWPTSNQQKNLNQKI 441
           G  +GT +P +   K   QK+
Sbjct: 160 GELKGTFYPLTGMSKETQQKL 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,218
Number of Sequences: 438
Number of extensions: 3171
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)