Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7o11
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.72 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.72 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 1   DSCNQVLNDGARVRNFLSVKYVKCETLQDCL 93
           D C+ ++N+   V NF    Y++ +  + C+
Sbjct: 466 DKCDTLINNAVAVENFKGGMYLRLKARRACM 496


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 1   DSCNQVLNDGARVRNFLSVKYVKCETLQDCL 93
           D C+ ++N+   V NF    Y++ +  + C+
Sbjct: 466 DKCDTLINNAVAVENFKGGMYLRLKARRACM 496


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 360 IYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLKP 476
           + +G+    LIDVN K    T  +      NDY++   P
Sbjct: 48  VKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNP 86


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 387 LIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 485
           LIDVN K    T  L       DY++  +P+ +
Sbjct: 65  LIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEY 97


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 387 LIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 485
           LIDVN K    T  L       DY++  +P+ +
Sbjct: 65  LIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEY 97


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 342 VTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 485
           VT    + + +    LIDVN K    T  L       DY++   P+ +
Sbjct: 46  VTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWDPKEY 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 340 PSSFHCNVNGN 308
           P++F CNV GN
Sbjct: 324 PATFTCNVRGN 334


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 555 QLITYDYSNYIEFFSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAPQKIA 704
           QL+T     Y++  +      ++    Q Q    A LK++D+     KIA
Sbjct: 474 QLVTLFTDFYVDLDAVTGHQSQQQQEEQTQSRVRAHLKRLDHQPYQYKIA 523


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 405 KPNTYTVKLLPGTFGNDYRIMLKPRRFNCEITRSLAIVPLNKYFNYMNDKQLITY 569
           K   Y + +         ++ML     N  ++R++ +V  N   NY N+ QL T+
Sbjct: 3   KNRNYALDVSSAASKTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENN-QLPTH 56


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 279 RFFDSAFIYKFPFTLQWKDDGVTYKYLI 362
           ++F+   + +  F L + + GVTYK+ I
Sbjct: 47  KYFEQT-LNELNFNLNYVNKGVTYKHTI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,757
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)