Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n23
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.61 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   5.7  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.9  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 196 AFSPLDPSSFSRPEQAVIKHVTLSLN---VDFENKVLNGSATLDVDVLQDIGDVVL 354
           AF+ L  S  + P   + K  TL L    +DF   VL+    LDVD++ ++   V+
Sbjct: 115 AFASLRKSIPTMPSDKLSKIQTLKLAARYIDFLYHVLSNENALDVDLIGNVCSYVV 170


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 702 HQYCELLGRRDFGVISELYKWSV 634
           H     +G RD GV+S L  W +
Sbjct: 52  HLLYAFVGLRDDGVVSVLDDWEI 74


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 266 DKVTCFITACSGREKEDGS 210
           DK+ CF  + +G    +GS
Sbjct: 24  DKILCFFASWAGYRNGEGS 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,443
Number of Sequences: 336
Number of extensions: 2993
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)