Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7n22
(707 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 293 4e-78
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 289 5e-77
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 287 1e-76
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 238 8e-62
UniRef50_A6PWH4 Cluster: HLA-B associated transcript 1; n=6; Hom... 236 4e-61
UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8; Aconoidasida|... 175 9e-43
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 161 2e-38
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 161 2e-38
UniRef50_UPI0000498D2C Cluster: DEAD/DEAH box helicase; n=3; Ent... 145 1e-33
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 135 1e-30
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 120 4e-26
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 116 4e-25
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 116 4e-25
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 116 4e-25
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 115 1e-24
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 114 2e-24
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 113 3e-24
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 109 7e-23
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 109 7e-23
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 109 9e-23
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 108 1e-22
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 107 2e-22
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 107 3e-22
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 107 3e-22
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 106 6e-22
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 105 1e-21
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 104 2e-21
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 103 4e-21
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 103 4e-21
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 103 6e-21
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 102 8e-21
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 102 1e-20
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 101 1e-20
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 101 2e-20
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 101 2e-20
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 101 2e-20
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 101 2e-20
UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein; ... 101 2e-20
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 101 2e-20
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 100 3e-20
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 100 3e-20
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 100 4e-20
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 100 4e-20
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 100 4e-20
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 100 4e-20
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 99 5e-20
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 99 5e-20
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 100 7e-20
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 99 9e-20
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 99 1e-19
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 99 1e-19
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 99 1e-19
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 99 1e-19
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 99 1e-19
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 98 2e-19
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 98 2e-19
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 98 2e-19
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 98 2e-19
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 98 2e-19
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 97 3e-19
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 97 4e-19
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 97 4e-19
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 97 4e-19
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 97 4e-19
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 97 5e-19
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 96 7e-19
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 96 9e-19
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 96 9e-19
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 96 9e-19
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 96 9e-19
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 95 1e-18
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 95 2e-18
UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1; S... 95 2e-18
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 95 2e-18
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 95 2e-18
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 95 2e-18
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 94 3e-18
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 94 3e-18
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 94 3e-18
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 94 3e-18
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 94 3e-18
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 94 3e-18
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 94 3e-18
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 94 3e-18
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 94 3e-18
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 93 5e-18
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 93 5e-18
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 93 6e-18
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 93 6e-18
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 93 6e-18
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 93 6e-18
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 93 8e-18
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 93 8e-18
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 93 8e-18
UniRef50_A4QTR1 Cluster: ATP-dependent RNA helicase DBP9; n=4; A... 93 8e-18
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 92 1e-17
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 92 1e-17
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 92 1e-17
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 92 1e-17
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 92 1e-17
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 92 1e-17
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 92 1e-17
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 91 2e-17
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 91 2e-17
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 91 2e-17
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 91 2e-17
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 91 2e-17
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 91 2e-17
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 91 3e-17
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 91 3e-17
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 91 3e-17
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 91 3e-17
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 90 4e-17
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 90 4e-17
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 90 6e-17
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 90 6e-17
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 90 6e-17
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 90 6e-17
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 90 6e-17
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 90 6e-17
UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helic... 89 7e-17
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 89 7e-17
UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein; ... 89 7e-17
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 89 7e-17
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 89 7e-17
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 89 1e-16
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 89 1e-16
UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep... 89 1e-16
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 88 2e-16
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 88 2e-16
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 88 2e-16
UniRef50_Q9FNM7 Cluster: DEAD-box ATP-dependent RNA helicase 26;... 88 2e-16
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 88 2e-16
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 87 3e-16
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 87 3e-16
UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2; ... 87 3e-16
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 87 3e-16
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 87 3e-16
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 87 4e-16
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 87 4e-16
UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;... 87 4e-16
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 87 5e-16
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 87 5e-16
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 87 5e-16
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 87 5e-16
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 87 5e-16
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 87 5e-16
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 87 5e-16
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 87 5e-16
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 87 5e-16
UniRef50_A3H9E9 Cluster: DEAD/DEAH box helicase-like; n=1; Caldi... 87 5e-16
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 86 7e-16
UniRef50_A6GSW1 Cluster: Putative ATP-dependent RNA helicase; n=... 86 7e-16
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 86 7e-16
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 86 7e-16
UniRef50_A0EIJ0 Cluster: Chromosome undetermined scaffold_99, wh... 86 7e-16
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 86 7e-16
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 86 7e-16
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 86 9e-16
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 86 9e-16
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 86 9e-16
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 86 9e-16
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 86 9e-16
UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog... 86 9e-16
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 86 9e-16
UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5; Ent... 85 1e-15
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 85 1e-15
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 85 1e-15
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 85 1e-15
UniRef50_A4BBH5 Cluster: Probable ATP-dependent RNA helicase; n=... 85 1e-15
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 85 1e-15
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 85 1e-15
UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter ... 85 2e-15
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 85 2e-15
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 85 2e-15
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 85 2e-15
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 85 2e-15
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 85 2e-15
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 85 2e-15
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 85 2e-15
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 85 2e-15
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 85 2e-15
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 85 2e-15
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 85 2e-15
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 85 2e-15
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 84 3e-15
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 84 3e-15
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 84 3e-15
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 84 3e-15
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 84 3e-15
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 84 3e-15
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 84 3e-15
UniRef50_Q5CWJ4 Cluster: Drs1p, eIF4a-1-family RNA SFII helicase... 84 3e-15
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 84 3e-15
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 84 3e-15
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 84 3e-15
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 84 4e-15
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 84 4e-15
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 84 4e-15
UniRef50_Q011U7 Cluster: Myc-regulated DEAD/H box 18 RNA helicas... 84 4e-15
UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box A... 83 5e-15
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 83 5e-15
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 83 5e-15
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 83 5e-15
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 83 5e-15
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 83 5e-15
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 83 7e-15
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 83 7e-15
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 83 7e-15
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 83 7e-15
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 83 7e-15
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 83 7e-15
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 83 7e-15
UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus van... 83 7e-15
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 83 9e-15
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 83 9e-15
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 83 9e-15
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 83 9e-15
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 83 9e-15
UniRef50_A4S107 Cluster: Predicted protein; n=1; Ostreococcus lu... 83 9e-15
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 83 9e-15
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 83 9e-15
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 83 9e-15
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 83 9e-15
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 83 9e-15
UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=... 82 1e-14
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 82 1e-14
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 82 1e-14
UniRef50_Q3ZDP1 Cluster: Vasa-like protein; n=7; Neoptera|Rep: V... 82 1e-14
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 82 2e-14
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 82 2e-14
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 82 2e-14
UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1; ... 82 2e-14
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 82 2e-14
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 82 2e-14
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 81 2e-14
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 81 2e-14
UniRef50_UPI0000498707 Cluster: DEAD/DEAH box helicase; n=1; Ent... 81 3e-14
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 81 3e-14
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 81 3e-14
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 81 3e-14
UniRef50_Q4W7T8 Cluster: VASA RNA helicase; n=1; Artemia francis... 81 3e-14
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 81 3e-14
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 81 3e-14
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 81 3e-14
UniRef50_P09052 Cluster: ATP-dependent RNA helicase vasa; n=5; E... 81 3e-14
UniRef50_Q6F1J3 Cluster: ATP-dependent RNA helicase; n=4; Mollic... 80 5e-14
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 80 5e-14
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 80 5e-14
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 80 5e-14
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 80 5e-14
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 80 5e-14
UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1; Picrop... 80 5e-14
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 80 5e-14
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 80 6e-14
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 80 6e-14
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 80 6e-14
UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2; ... 80 6e-14
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 79 8e-14
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 79 8e-14
UniRef50_A7QKJ8 Cluster: Chromosome chr2 scaffold_112, whole gen... 79 8e-14
UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4; Eukaryota|... 79 8e-14
UniRef50_Q4U8S0 Cluster: DEAD-box family helicase, putative; n=2... 79 8e-14
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 79 8e-14
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 79 8e-14
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 79 1e-13
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 79 1e-13
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 79 1e-13
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 79 1e-13
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 79 1e-13
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 79 1e-13
UniRef50_Q8IV96 Cluster: DDX6 protein; n=8; Eukaryota|Rep: DDX6 ... 79 1e-13
UniRef50_A5DU73 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 79 1e-13
UniRef50_Q4S6B9 Cluster: Chromosome 9 SCAF14729, whole genome sh... 79 1e-13
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 79 1e-13
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 79 1e-13
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 79 1e-13
UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 79 1e-13
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 79 1e-13
UniRef50_A7RKF5 Cluster: Predicted protein; n=1; Nematostella ve... 79 1e-13
UniRef50_A7AWZ5 Cluster: DEAD/DEAH box helicase and helicase con... 79 1e-13
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 79 1e-13
UniRef50_Q97WT0 Cluster: ATP-dependent RNA helicase; n=4; Sulfol... 79 1e-13
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 78 2e-13
UniRef50_Q5K7L2 Cluster: ATP-dependent RNA helicase DBP9; n=1; F... 78 2e-13
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 78 2e-13
UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyosteli... 78 2e-13
UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1; ... 78 2e-13
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 78 2e-13
UniRef50_Q2GSC7 Cluster: Putative uncharacterized protein; n=6; ... 78 2e-13
UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2; G... 78 2e-13
UniRef50_Q4PFD9 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 78 2e-13
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 77 3e-13
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 77 3e-13
UniRef50_UPI0000ECBDA5 Cluster: ATP-dependent RNA helicase DDX24... 77 4e-13
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 77 4e-13
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 77 4e-13
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 77 4e-13
UniRef50_Q3LW03 Cluster: UB2 probably involved in pre-mRNA splic... 77 4e-13
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 77 4e-13
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 77 4e-13
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 77 4e-13
UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111... 77 4e-13
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 77 6e-13
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 77 6e-13
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 77 6e-13
UniRef50_A4S6M9 Cluster: Predicted protein; n=3; Ostreococcus|Re... 77 6e-13
UniRef50_Q4UE18 Cluster: RNA helicase, putative; n=2; Theileria|... 77 6e-13
UniRef50_UPI0000E4A264 Cluster: PREDICTED: hypothetical protein;... 76 7e-13
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 76 7e-13
UniRef50_Q21EB3 Cluster: DEAD/DEAH box helicase-like protein; n=... 76 7e-13
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 76 7e-13
UniRef50_Q7JQN4 Cluster: LD15481p; n=7; Endopterygota|Rep: LD154... 76 7e-13
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 76 7e-13
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 76 7e-13
UniRef50_Q6CH90 Cluster: Yarrowia lipolytica chromosome A of str... 76 7e-13
UniRef50_A6FEC9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 76 1e-12
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 76 1e-12
UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase s... 76 1e-12
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 76 1e-12
UniRef50_Q4N0E9 Cluster: ATP-dependent RNA helicase, putative; n... 76 1e-12
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 76 1e-12
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 76 1e-12
UniRef50_UPI0001555979 Cluster: PREDICTED: similar to ATP-depend... 75 1e-12
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 75 1e-12
UniRef50_UPI0000D57716 Cluster: PREDICTED: similar to CG9143-PA;... 75 1e-12
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 75 1e-12
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 75 1e-12
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 75 1e-12
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 75 1e-12
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 75 1e-12
UniRef50_A5K5I2 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-12
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-12
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 75 1e-12
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 75 1e-12
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 75 1e-12
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 75 2e-12
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 75 2e-12
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 75 2e-12
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 75 2e-12
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 75 2e-12
UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146, w... 75 2e-12
UniRef50_Q86XP3 Cluster: ATP-dependent RNA helicase DDX42; n=47;... 75 2e-12
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 75 2e-12
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 75 2e-12
UniRef50_Q1JTF7 Cluster: ATP-dependent RNA helicase, putative; n... 75 2e-12
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 75 2e-12
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 75 2e-12
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 75 2e-12
UniRef50_Q0UMB6 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 75 2e-12
UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=... 75 2e-12
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 74 3e-12
UniRef50_Q4N5F8 Cluster: ATP-dependent RNA helicase, putative; n... 74 3e-12
UniRef50_A7RHS2 Cluster: Predicted protein; n=1; Nematostella ve... 74 3e-12
UniRef50_Q4PEX7 Cluster: ATP-dependent RNA helicase DBP8; n=1; U... 74 3e-12
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 74 3e-12
UniRef50_Q03GJ4 Cluster: Superfamily II DNA and RNA helicase; n=... 74 4e-12
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 74 4e-12
UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein; ... 74 4e-12
UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6; Plasmodiu... 74 4e-12
UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=... 74 4e-12
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 74 4e-12
UniRef50_A5K9H3 Cluster: Pre-mRNA splicing factor RNA helicase P... 74 4e-12
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 74 4e-12
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 74 4e-12
UniRef50_Q9NY93 Cluster: Probable ATP-dependent RNA helicase DDX... 74 4e-12
UniRef50_Q6C7X8 Cluster: ATP-dependent RNA helicase DBP10; n=3; ... 74 4e-12
UniRef50_Q5QVE4 Cluster: ATP-dependent RNA helicase; n=2; Idioma... 73 5e-12
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 73 5e-12
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 73 5e-12
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 73 5e-12
UniRef50_Q54CD8 Cluster: Putative RNA helicase; n=2; Dictyosteli... 73 5e-12
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 73 5e-12
UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase con... 73 5e-12
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 73 5e-12
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 73 5e-12
UniRef50_Q7S6F3 Cluster: ATP-dependent RNA helicase dbp-9; n=14;... 73 5e-12
UniRef50_UPI00006CEB85 Cluster: DEAD/DEAH box helicase family pr... 73 7e-12
UniRef50_UPI00015A4B44 Cluster: DEAD (Asp-Glu-Ala-Asp) box polyp... 73 7e-12
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 73 7e-12
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 73 7e-12
UniRef50_Q54VF1 Cluster: Putative uncharacterized protein; n=1; ... 73 7e-12
UniRef50_A7AWJ7 Cluster: DEAD/DEAH box helicase and helicase con... 73 7e-12
UniRef50_P21507 Cluster: ATP-dependent RNA helicase srmB; n=82; ... 73 7e-12
UniRef50_Q9C8S9 Cluster: Probable DEAD-box ATP-dependent RNA hel... 73 7e-12
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 73 7e-12
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 73 7e-12
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 73 7e-12
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 73 9e-12
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 73 9e-12
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 73 9e-12
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 73 9e-12
UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5; ... 73 9e-12
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 73 9e-12
UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein; ... 73 9e-12
UniRef50_Q8SSD2 Cluster: ATP-DEPENDENT RNA HELICASE INVOLVED IN ... 73 9e-12
UniRef50_A4QQK0 Cluster: Putative uncharacterized protein; n=3; ... 73 9e-12
UniRef50_A2XVF7 Cluster: DEAD-box ATP-dependent RNA helicase 13;... 73 9e-12
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 72 1e-11
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 72 1e-11
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 72 1e-11
UniRef50_A7ARY5 Cluster: DEAD/DEAH box helicase protein family; ... 72 1e-11
UniRef50_A4IBK1 Cluster: ATP-dependent RNA helicase, putative; n... 72 1e-11
UniRef50_Q2GWX0 Cluster: Putative uncharacterized protein; n=4; ... 72 1e-11
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 72 1e-11
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 72 1e-11
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 72 2e-11
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 72 2e-11
UniRef50_Q9AW05 Cluster: DEAD box protein; n=1; Guillardia theta... 72 2e-11
UniRef50_A2YDR2 Cluster: Putative uncharacterized protein; n=2; ... 72 2e-11
UniRef50_Q675R0 Cluster: ATP-dependent 61 kDa nucleolar RNA heli... 72 2e-11
UniRef50_Q5CXB0 Cluster: CG6539/Dhh1-like SF II RNA helicase; n=... 72 2e-11
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 72 2e-11
UniRef50_Q8SR01 Cluster: ATP-dependent RNA helicase DBP4; n=1; E... 72 2e-11
UniRef50_UPI0000499ECF Cluster: DEAD/DEAH box helicase; n=1; Ent... 71 2e-11
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 71 2e-11
UniRef50_Q7NAY1 Cluster: SrmB; n=1; Mycoplasma gallisepticum|Rep... 71 2e-11
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 71 2e-11
UniRef50_Q1WSN6 Cluster: ATP-dependent RNA helicase; n=1; Lactob... 71 2e-11
UniRef50_Q1VPX9 Cluster: ATP-independent RNA helicase; n=9; Bact... 71 2e-11
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 71 2e-11
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 71 2e-11
UniRef50_P91340 Cluster: Putative uncharacterized protein; n=3; ... 71 2e-11
UniRef50_A6SDG8 Cluster: Putative uncharacterized protein; n=1; ... 71 2e-11
UniRef50_Q8W4E1 Cluster: DEAD-box ATP-dependent RNA helicase 47;... 71 2e-11
UniRef50_P38719 Cluster: ATP-dependent RNA helicase DBP8; n=14; ... 71 2e-11
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 71 2e-11
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 71 3e-11
UniRef50_Q016I5 Cluster: Predicted ATP-dependent RNA helicase FA... 71 3e-11
UniRef50_A5BHG9 Cluster: Putative uncharacterized protein; n=1; ... 71 3e-11
UniRef50_Q93382 Cluster: Putative uncharacterized protein; n=2; ... 71 3e-11
UniRef50_A4V6L4 Cluster: DEAD/H box protein; n=1; Dugesia japoni... 71 3e-11
UniRef50_A2DSJ0 Cluster: DEAD/DEAH box helicase family protein; ... 71 3e-11
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 71 3e-11
UniRef50_Q96XQ7 Cluster: 337aa long hypothetical ATP-dependent R... 71 3e-11
UniRef50_Q9P7C7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 71 3e-11
UniRef50_A5DPU0 Cluster: ATP-dependent RNA helicase MAK5; n=1; P... 71 3e-11
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 71 4e-11
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 71 4e-11
UniRef50_Q4UA43 Cluster: DEAD-family helicase, putative; n=3; Pi... 71 4e-11
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 71 4e-11
UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116, mito... 71 4e-11
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 70 5e-11
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 70 5e-11
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 70 5e-11
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 70 5e-11
UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein; ... 70 5e-11
UniRef50_Q9GV12 Cluster: Vasa-related protein CnVAS2; n=14; Eume... 70 5e-11
UniRef50_Q4QIQ9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 70 5e-11
UniRef50_Q4N7J8 Cluster: DEAD box RNA helicase, putative; n=2; T... 70 5e-11
UniRef50_A7APE7 Cluster: DEAD/DEAH box helicase domain containin... 70 5e-11
UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1; ... 70 5e-11
UniRef50_A6RW79 Cluster: Putative uncharacterized protein; n=1; ... 70 5e-11
UniRef50_Q8NHQ9 Cluster: ATP-dependent RNA helicase DDX55; n=86;... 70 5e-11
UniRef50_Q06218 Cluster: ATP-dependent RNA helicase DBP9; n=4; A... 70 5e-11
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 70 6e-11
UniRef50_A7CSF3 Cluster: DEAD/DEAH box helicase domain protein; ... 70 6e-11
UniRef50_Q4QFH1 Cluster: ATP-dependent RNA helicase, putative; n... 70 6e-11
UniRef50_Q4P7M1 Cluster: ATP-dependent RNA helicase DBP9; n=2; U... 70 6e-11
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 70 6e-11
UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=... 69 9e-11
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 69 9e-11
UniRef50_Q869K2 Cluster: Similar to Dictyostelium discoideum (Sl... 69 9e-11
UniRef50_Q7PDQ7 Cluster: Similar ATP-dependent RNA Helicase; n=2... 69 9e-11
UniRef50_Q5CKB1 Cluster: ATP-dependent RNA helicase; n=2; Crypto... 69 9e-11
UniRef50_A0E4U1 Cluster: Chromosome undetermined scaffold_79, wh... 69 9e-11
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 69 1e-10
UniRef50_Q014Y7 Cluster: RNA helicase-like protein; n=2; Ostreoc... 69 1e-10
UniRef50_Q4UG97 Cluster: ATP-dependent RNA helicase, putative; n... 69 1e-10
UniRef50_Q4IBS2 Cluster: ATP-dependent RNA helicase MAK5; n=2; S... 69 1e-10
UniRef50_Q08BL1 Cluster: Zgc:153386; n=2; Danio rerio|Rep: Zgc:1... 69 1e-10
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 69 1e-10
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 69 1e-10
UniRef50_Q1LSH5 Cluster: DEAD/DEAH box helicase-like protein pre... 69 1e-10
UniRef50_Q013X8 Cluster: DEAD/DEAH box RNA helicase; n=1; Ostreo... 69 1e-10
UniRef50_Q0UN57 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 69 1e-10
UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 68 2e-10
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 68 2e-10
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 68 2e-10
UniRef50_Q66HG7 Cluster: Probable ATP-dependent RNA helicase DDX... 68 2e-10
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 68 2e-10
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 68 3e-10
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 68 3e-10
UniRef50_Q4RM08 Cluster: Chromosome 10 SCAF15019, whole genome s... 68 3e-10
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 68 3e-10
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 68 3e-10
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 68 3e-10
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 68 3e-10
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 68 3e-10
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 68 3e-10
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 68 3e-10
UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A... 68 3e-10
UniRef50_A4RK80 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 68 3e-10
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 67 3e-10
UniRef50_Q4W7T7 Cluster: VASA RNA helicase; n=3; Daphniidae|Rep:... 67 3e-10
UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein; ... 67 3e-10
UniRef50_A7AV91 Cluster: DEAD/DEAH box helicase, putative; n=1; ... 67 3e-10
UniRef50_A2DEZ7 Cluster: DEAD/DEAH box helicase family protein; ... 67 3e-10
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 67 3e-10
UniRef50_Q0UG00 Cluster: ATP-dependent RNA helicase MSS116, mito... 67 3e-10
>UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82;
Eukaryota|Rep: ATP-dependent RNA helicase WM6 -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 293 bits (718), Expect = 4e-78
Identities = 139/164 (84%), Positives = 152/164 (92%), Gaps = 1/164 (0%)
Frame = +1
Query: 196 APKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQA 375
APKK+VKG+YVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQA
Sbjct: 26 APKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQA 85
Query: 376 KSGMGKTAVFVLATLQQLEPSESHV-YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVF 552
KSGMGKTAVFVLATLQQLEPS+++ +VLVMCHTRELAFQISKEYERFSKYM V+V+VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 553 FGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFKN 684
FGGM IQKDEE LK+ PHIVVGTPGRILAL+ +KKLN + K+
Sbjct: 146 FGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKH 189
>UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;
Eukaryota|Rep: ATP-dependent RNA helicase DDX39 - Homo
sapiens (Human)
Length = 427
Score = 289 bits (709), Expect = 5e-77
Identities = 133/167 (79%), Positives = 148/167 (88%)
Frame = +1
Query: 184 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 363
ST PKK++KGSYVSIHSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+LGMD+
Sbjct: 25 STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDV 84
Query: 364 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 543
LCQAKSGMGKTAVFVLATLQQ+EP V VLVMCHTRELAFQISKEYERFSKYM V+V
Sbjct: 85 LCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKV 144
Query: 544 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFKN 684
SVFFGG+ I+KDEEVLK CPH+VVGTPGRILALV ++ + + K+
Sbjct: 145 SVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKH 191
>UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55;
Eukaryota|Rep: Spliceosome RNA helicase BAT1 - Homo
sapiens (Human)
Length = 428
Score = 287 bits (705), Expect = 1e-76
Identities = 135/165 (81%), Positives = 146/165 (88%)
Frame = +1
Query: 190 EVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 369
E KK+VKGSYVSIHSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+LGMD+LC
Sbjct: 28 EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 370 QAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 549
QAKSGMGKTAVFVLATLQQLEP V VLVMCHTRELAFQISKEYERFSKYM V+V+V
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 147
Query: 550 FFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFKN 684
FFGG+ I+KDEEVLK CPHIVVGTPGRILAL +K LN + K+
Sbjct: 148 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 192
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 238 bits (583), Expect = 8e-62
Identities = 108/158 (68%), Positives = 130/158 (82%)
Frame = +1
Query: 211 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 390
VK YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMG
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
Query: 391 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 570
KTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 571 QKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFKN 684
+ +++LK CPHIVVGTPGR+LAL K L+ + ++
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRH 193
>UniRef50_A6PWH4 Cluster: HLA-B associated transcript 1; n=6; Homo
sapiens|Rep: HLA-B associated transcript 1 - Homo
sapiens (Human)
Length = 197
Score = 236 bits (577), Expect = 4e-61
Identities = 123/170 (72%), Positives = 132/170 (77%), Gaps = 28/170 (16%)
Frame = +1
Query: 190 EVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 369
E KK+VKGSYVSIHSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+LGMD+LC
Sbjct: 28 EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 370 QAKSGMGKTAVFVLATLQQLEP-------SESH---------------------VYVLVM 465
QAKSGMGKTAVFVLATLQQLEP +SH V VLVM
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVTGQVCFCDSHFPRGDNEELHLPYVSVYFLPKVSVLVM 147
Query: 466 CHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIV 615
CHTRELAFQISKEYERFSKYM V+V+VFFGG+ I+KDEEVLK CPHIV
Sbjct: 148 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 197
>UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8;
Aconoidasida|Rep: DEAD-box helicase 1 - Plasmodium
falciparum
Length = 457
Score = 175 bits (426), Expect = 9e-43
Identities = 90/172 (52%), Positives = 116/172 (67%), Gaps = 21/172 (12%)
Frame = +1
Query: 211 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 390
++GSY ++H+ GF+DF LKPE+LRAI + GFEHPSEVQ E IP A+ G DILCQAKSGMG
Sbjct: 45 MRGSYATVHTGGFKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMG 104
Query: 391 KTAVFVLATLQQLEPSESH--------------------VYVLVMCHTRELAFQISKEYE 510
KTAVFVL+ LQQL+ +E+ V L + HTRELA+QI E++
Sbjct: 105 KTAVFVLSILQQLDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFD 164
Query: 511 RFSKYMSGVRVSVFFGGMPIQKDEEVLK-TACPHIVVGTPGRILALVNSKKL 663
RFSKY+ VR V +GG+ + K ++ K PHI++GTPGRILAL+ K L
Sbjct: 165 RFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYL 216
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 161 bits (390), Expect = 2e-38
Identities = 81/165 (49%), Positives = 106/165 (64%), Gaps = 1/165 (0%)
Frame = +1
Query: 184 STEVAP-KKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 360
+ AP +K +G HSS F DF LK ++LR++ + GFE PSEVQH+CIP A+ G D
Sbjct: 19 ANSTAPVQKHAQGFNTGGHSS-FNDFSLKQDLLRSVKEAGFERPSEVQHQCIPNAIHGKD 77
Query: 361 ILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVR 540
+LCQAK+G GKTAVFVL+ L QL LV+CHTRELAFQI E++R K+ + +
Sbjct: 78 VLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKF-TNFK 136
Query: 541 VSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFET 675
V +GG+ D LKT PHI+V TPGR L+L+ +K ET
Sbjct: 137 VKAVYGGVEESVDIHTLKTKKPHILVATPGRCLSLIKAKPSVIET 181
>UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7;
Trypanosomatidae|Rep: RNA helicase, putative -
Leishmania major
Length = 435
Score = 161 bits (390), Expect = 2e-38
Identities = 79/151 (52%), Positives = 107/151 (70%), Gaps = 4/151 (2%)
Frame = +1
Query: 217 GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 396
G++ ++ GF+DF LK E+ AI + GFEHPSEVQH+ +P+A+LG DIL QAKSGMGKT
Sbjct: 28 GTHSAVALGGFQDFCLKSELANAIRENGFEHPSEVQHQALPKAMLGADILAQAKSGMGKT 87
Query: 397 AVFVLATLQQLE--PSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 564
AVFV A L+Q+E P Y +V+ H RELA+QI +E++RFSKY+ VFFGG+
Sbjct: 88 AVFVFALLEQVEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGVFFGGI 147
Query: 565 PIQKDEEVLKTACPHIVVGTPGRILALVNSK 657
P ++ + LK P I+VGTPGR+ AL+ +K
Sbjct: 148 PEDENVKQLKKEVPAIIVGTPGRMKALIQNK 178
>UniRef50_UPI0000498D2C Cluster: DEAD/DEAH box helicase; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 419
Score = 145 bits (351), Expect = 1e-33
Identities = 77/156 (49%), Positives = 102/156 (65%), Gaps = 5/156 (3%)
Frame = +1
Query: 214 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 393
K +YV S F++ LK EI+++I DCGFEHPSEVQ + IP+A+L DILCQAKSGMGK
Sbjct: 26 KDTYVGTVS--FQEMGLKKEIMQSITDCGFEHPSEVQSQVIPKALLRQDILCQAKSGMGK 83
Query: 394 TAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYM-----SGVRVSVFFG 558
TAVFVL+ L Q HV +V+CHTRELA Q+ E++R K + ++ + + G
Sbjct: 84 TAVFVLSILNQGLFLGDHVSAIVICHTRELARQVQNEFDRMKKRLVESIGKDIQTASYIG 143
Query: 559 GMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLN 666
G P D + LK P I+VGTPGR+ +L NS L+
Sbjct: 144 GNPESNDVDDLKNRKPTIIVGTPGRLASLNNSGALD 179
>UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_12,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 471
Score = 135 bits (326), Expect = 1e-30
Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F++F LK E+LRA+ + GFEHP+ VQ E + A+LG ++CQAK+G GKTAVFVL L
Sbjct: 73 SQFKNFGLKEELLRAVKEAGFEHPTRVQAESLTNALLGEQLICQAKAGTGKTAVFVLTVL 132
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFF-GGMPIQKDEEVLKT 597
+ + V LV+ HTRELA Q E+ R K+M V+V F+ GG P+ + + ++T
Sbjct: 133 NTINTESNKVECLVITHTRELAQQARDEFLRLGKFMKSVKVECFYGGGEPVSVNIQTIET 192
Query: 598 ACPHIVVGTPGRILALVNSKK 660
P IVVGTPGR+ L+ +K
Sbjct: 193 VKPQIVVGTPGRLKDLICERK 213
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 120 bits (289), Expect = 4e-26
Identities = 63/145 (43%), Positives = 80/145 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L IL+A+ D GFE PS +Q CIP + G D+L A++G GKTA F L L Q
Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++PSE H +LVM TRELA Q++ E F KY G R+ +GG LK
Sbjct: 67 IDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGA- 125
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
+VVGTPGRIL + LN +
Sbjct: 126 QVVVGTPGRILDHIRRGTLNLSELR 150
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 116 bits (280), Expect = 4e-25
Identities = 58/147 (39%), Positives = 88/147 (59%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D L+ E+L+AI + GF PS +Q IP+ + G D++ QA++G GKTA F L LQ+
Sbjct: 7 FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ ++ V LV+C TRELA Q++ +K++ GVR+ +GG PI+ L+
Sbjct: 67 IDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGA- 125
Query: 607 HIVVGTPGRILALVNSKKLNFETFKNT 687
+VVGTPGRIL +N L + T
Sbjct: 126 QVVVGTPGRILDHINRGTLQLGVVRMT 152
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 116 bits (280), Expect = 4e-25
Identities = 55/143 (38%), Positives = 87/143 (60%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F +F + E+L+AI D GFE P+ +Q IPQ + G D+ QA++G GKTA F + +++
Sbjct: 7 FAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIER 66
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L+P +V LV+ TRELA Q ++E+ R KY G+ V +GG PI++ LK
Sbjct: 67 LDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALK-GTV 125
Query: 607 HIVVGTPGRILALVNSKKLNFET 675
+V+GTPGR++ + L+ ++
Sbjct: 126 QVVIGTPGRVIDHIKRGTLHLDS 148
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 116 bits (280), Expect = 4e-25
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 3/156 (1%)
Frame = +1
Query: 199 PKKEVK---GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 369
PKK+ + ++ + F DF LK E+L I + GFE PS +Q E IP A+ G DIL
Sbjct: 29 PKKDTRPQTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILA 88
Query: 370 QAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 549
+AK+G GKTA FV+ TL++++P + + L+M TRELA Q S+ K+ G+ V
Sbjct: 89 RAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMV 147
Query: 550 FFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSK 657
GG + +D+ + HI+VGTPGR+L L + K
Sbjct: 148 TTGGTNL-RDDILRLNETVHILVGTPGRVLDLASRK 182
>UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia
intestinalis|Rep: GLP_15_13424_14974 - Giardia lamblia
ATCC 50803
Length = 516
Score = 115 bits (276), Expect = 1e-24
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF L+ E+L+AI+ GFE PS+VQ IP A+ D++CQAKSG GKTAVFVL+ L
Sbjct: 130 FSDFNLREEVLQAIISNGFESPSDVQSMAIPPALEHKDVICQAKSGKGKTAVFVLSLLHM 189
Query: 427 LEPSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVF--FGGMPIQKDEEVLK 594
++P + V LV+C+T ELA QI KE+ RF+ + ++ + GG+ + LK
Sbjct: 190 IDPQAAPHKVQALVLCNTHELAMQIYKEFTRFAINLPDIKDKILCAIGGVTVSLHVRALK 249
Query: 595 TACPHIVVGTPGRILALVNSKKLNFETFK 681
+ I VGT GR+ LV L+ K
Sbjct: 250 SKDVSIAVGTIGRVSDLVERGALDLSFIK 278
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 114 bits (275), Expect = 2e-24
Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Frame = +1
Query: 196 APKKEVKGSYVSI---HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL 366
AP K+++ + S F DF L+ E+L I GFE PS +Q + IP A+ G DIL
Sbjct: 18 APPKDLRPQTEDVTATQGSRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDIL 77
Query: 367 CQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVS 546
+AK+G GKTA F++ TL ++ S SH+ L++ TRELA Q S+ + ++ ++V
Sbjct: 78 ARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVM 137
Query: 547 VFFGGMPIQKDEEVLKTACP-HIVVGTPGRILAL 645
+ GG ++ D +L+ P HI+VGTPGRIL L
Sbjct: 138 ITTGGTTLRDD--ILRLQQPVHILVGTPGRILDL 169
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 113 bits (273), Expect = 3e-24
Identities = 60/131 (45%), Positives = 77/131 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D LK IL A+ D G+E PS +Q ECIP + G D+L A++G GKTA F L LQ
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L+P +LV+ TRELA Q+++ FSK+M GV V +GG L+ P
Sbjct: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-P 126
Query: 607 HIVVGTPGRIL 639
IVVGTPGR+L
Sbjct: 127 QIVVGTPGRLL 137
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 109 bits (262), Expect = 7e-23
Identities = 58/145 (40%), Positives = 85/145 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
+ D+ LK ++L+ I GFE PS +Q I + G DI QA+SG GKT F +A LQ
Sbjct: 40 WEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQI 99
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ S+ +LV+ TRE+A Q + +E +M G RV++ GG PI D+ L+ P
Sbjct: 100 CDMSQDVTQILVLASTREIAAQNAARFEDLGCFM-GARVALLSGGSPIAADKVALEKK-P 157
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
HIVVGTPGR+ ++N +L+ + K
Sbjct: 158 HIVVGTPGRVEHMININELSMDNIK 182
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 109 bits (262), Expect = 7e-23
Identities = 58/140 (41%), Positives = 77/140 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D LK +LR I GFE PS +Q I + G D++ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
LE LV+ TRELA QI K YM G GG ++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 607 HIVVGTPGRILALVNSKKLN 666
HIVVGTPGR+ ++N + L+
Sbjct: 154 HIVVGTPGRVFDMLNRRYLS 173
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 109 bits (261), Expect = 9e-23
Identities = 49/145 (33%), Positives = 86/145 (59%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D + PEI +A+ D GFE S +Q IPQ + D+ QA++G GKTA F + L+
Sbjct: 6 FKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLEN 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ ++++ +++C TRELA Q+++E + S Y+ + V +GG PI + + L+
Sbjct: 66 IDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKGV- 124
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
I++GTPGR++ ++ L+ K
Sbjct: 125 QIIIGTPGRVMDHIDRGTLSLNNIK 149
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 108 bits (260), Expect = 1e-22
Identities = 54/140 (38%), Positives = 85/140 (60%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D L PE++ AI G+ + +Q + IP + G D+ QA++G GKTA F + ++
Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ S + L++C TRELA Q+ E ++ SK+ G+RV +GG I++ LK A
Sbjct: 63 VDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLK-AGA 121
Query: 607 HIVVGTPGRILALVNSKKLN 666
HIVVGTPGRI+ ++ + LN
Sbjct: 122 HIVVGTPGRIIDHLDRRTLN 141
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 107 bits (258), Expect = 2e-22
Identities = 49/139 (35%), Positives = 81/139 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L P I++AI D G+E P+ +Q E IP + G D+ QA +G GKTA F + ++
Sbjct: 6 FSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIEL 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+P+ +V +V+C +RELA Q+ E + + + G+ + +GG PI++ + L
Sbjct: 66 CQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSRGV- 124
Query: 607 HIVVGTPGRILALVNSKKL 663
I++GTPGR++ + K L
Sbjct: 125 QIIIGTPGRVIDHIKRKTL 143
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 107 bits (257), Expect = 3e-22
Identities = 52/134 (38%), Positives = 85/134 (63%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D+ LK E+L I + G+E PS +Q E IP A+ G DIL +AK+G GK+ +++ L++
Sbjct: 91 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPMLER 150
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ + H+ LV+ TRELA Q+S+ + +K++ GV+V GG + +D+ +
Sbjct: 151 IDLKKDHIQALVLVPTRELALQVSQISIQIAKHLGGVKVMATTGGTNL-RDDIMRLDETV 209
Query: 607 HIVVGTPGRILALV 648
H+V+ TPGRIL L+
Sbjct: 210 HVVIATPGRILDLM 223
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 107 bits (256), Expect = 3e-22
Identities = 51/145 (35%), Positives = 81/145 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L EI AI++ GFE S +Q E IP + G DI+ A++G GKTA F + T++
Sbjct: 11 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 70
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
LE H+ L++C TREL Q+S+++ + KY V +GG I++ L+ P
Sbjct: 71 LEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN-P 129
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
IV+ TPGR++ + ++ + K
Sbjct: 130 QIVIATPGRMMDHMRRGSIHLDEIK 154
>UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=55; Lactobacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Enterococcus faecalis
(Streptococcus faecalis)
Length = 449
Score = 106 bits (254), Expect = 6e-22
Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ F +P I A+ + GFE P+EVQ + IP G ++ Q+++G GKT F+L + +
Sbjct: 4 FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMDK 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKY-MSGVRVSVFFGGMPIQKDEEVLKTAC 603
++P+ V +++ +RELA QI +E ++ +++ +RVS F GG Q+ LK
Sbjct: 64 VKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQ 123
Query: 604 PHIVVGTPGRILALVNSKKLNFET 675
PH+V+GTPGRIL ++N + L T
Sbjct: 124 PHVVIGTPGRILDMMNEQALKVHT 147
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 105 bits (252), Expect = 1e-21
Identities = 56/142 (39%), Positives = 83/142 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
FR+ L +L+++ GFE + +Q E IP A+ G DI+ QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ + V +V+ TRELA Q+ +E + K+ VR+ +GG I + LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 607 HIVVGTPGRILALVNSKKLNFE 672
HI+VGTPGRIL +N K L +
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQ 143
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 104 bits (250), Expect = 2e-21
Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM--DILCQAKSGMGKTAVFVLATL 420
F + + PEI +AI + G+E+P VQ E IP +LG D++ A++G GKTA F L L
Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPY-LLGENNDVVALAQTGTGKTAAFGLPLL 62
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
QQ++ L++C TREL QI+ + +SKY+ G++V +GG I LK
Sbjct: 63 QQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLKRG 122
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFKN 684
HI+V TPGR+L L+ K ++ T N
Sbjct: 123 V-HIIVATPGRLLDLMERKTVSLSTVHN 149
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 103 bits (247), Expect = 4e-21
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D LK +L+AI D GFE PS++Q E IP A+ G DI+ QA++G GKTA F A +
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65
Query: 427 LEPS--ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
+ S + L++ TRELA Q+++E R K+ + V +GG PI + LK
Sbjct: 66 ADFSGKKKSPKALILAPTRELAIQVNEELVRLGKH-EKLSVLPIYGGQPIDRQIRALKNG 124
Query: 601 CPHIVVGTPGRILALVNSKKL 663
IVVGTPGR+L L+ K L
Sbjct: 125 V-DIVVGTPGRVLDLIRRKSL 144
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 103 bits (247), Expect = 4e-21
Identities = 51/143 (35%), Positives = 84/143 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L+ +L A+ + G+E PS +Q CIP + G D+L +A++G GKTA F L L +
Sbjct: 46 FAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDR 105
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L+ + + VLV+ TRELA Q+++ ++R++K + G V +GG + L
Sbjct: 106 LDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLARGA- 164
Query: 607 HIVVGTPGRILALVNSKKLNFET 675
H++VGTPGR++ + K LN ++
Sbjct: 165 HVIVGTPGRVMDHIERKSLNLDS 187
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 103 bits (246), Expect = 6e-21
Identities = 52/131 (39%), Positives = 80/131 (61%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L P I+RA+ + GFE + +Q + IP A+ G D++ QA++G GKTA F + ++
Sbjct: 4 FTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEA 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ P+ V LV+ TRELA Q+++E R K + G+R +GG + + L+ P
Sbjct: 64 IRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALE-ELP 121
Query: 607 HIVVGTPGRIL 639
HIVVGTPGR+L
Sbjct: 122 HIVVGTPGRLL 132
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 102 bits (245), Expect = 8e-21
Identities = 52/140 (37%), Positives = 78/140 (55%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L+ +++R + F P+++Q IP A+ GMD+L Q+KSG GKT ++V+ LQ S
Sbjct: 32 LRRQVMRGLAAENFRTPTKIQAAAIPIALTGMDLLVQSKSGTGKTLIYVVTALQMCSLST 91
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
H VLV+ TRELA Q+ + + + +VS F GG + +D E L+ H+ +G
Sbjct: 92 QHPEVLVILPTRELALQVHDIFRFLGEKLRSFKVSSFMGGTDVTRDREKLRNC--HVAIG 149
Query: 622 TPGRILALVNSKKLNFETFK 681
TPGR+L L LN K
Sbjct: 150 TPGRLLQLHEKGVLNMSMVK 169
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 102 bits (244), Expect = 1e-20
Identities = 54/143 (37%), Positives = 86/143 (60%)
Frame = +1
Query: 244 GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ 423
GF +F L+ E++ +I G+ P+EVQ IP A+ G D++ ++K+G GKTA +++ +
Sbjct: 3 GFEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPIIN 62
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
E + L++ TRELA Q++K E K SG+R V +GG+ I K E++
Sbjct: 63 N-TAKEKGIRALILLPTRELAVQVAKVSEALGK-RSGIRTVVVYGGVSINKQIELILRGA 120
Query: 604 PHIVVGTPGRILALVNSKKLNFE 672
+I+VGTPGR L L++ LNF+
Sbjct: 121 -NIIVGTPGRTLDLIDRGILNFD 142
>UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_383_7421_6129 - Giardia lamblia ATCC
50803
Length = 430
Score = 101 bits (243), Expect = 1e-20
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Frame = +1
Query: 208 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 387
+VKGS V S G LK E+L + GF+ + VQ IP + D++ +AK+G
Sbjct: 15 DVKGSGVLFSSLG-----LKQELLMGLTQEGFQQLTPVQELAIPHILARRDVVARAKNGT 69
Query: 388 GKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGV--RVSVFFGG 561
GKT F++ LQ + P++ H+ LV+ HTRELA Q +K + SK M V R+ GG
Sbjct: 70 GKTGSFLIPILQMVNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMPDVTGRIMCAIGG 129
Query: 562 MPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNF 669
+ I +D E + P +V+ TPGR+ L++ + LNF
Sbjct: 130 VSIAEDRERAREK-PLVVLATPGRLQQLIDEEILNF 164
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 101 bits (242), Expect = 2e-20
Identities = 49/142 (34%), Positives = 79/142 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L ++L +++CGF PS +QH+ IP G D++ +AKSG GKTAVF + L+
Sbjct: 26 FSQMGLSQQVLNGLLNCGFHKPSPIQHKSIPLGRCGFDLIVRAKSGTGKTAVFGIIALEM 85
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ S V V+++ TRE+A QI + + G++V F GG+ + D + L
Sbjct: 86 IDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGLKVESFIGGVAMDIDRKKLSNC-- 143
Query: 607 HIVVGTPGRILALVNSKKLNFE 672
HI +G PGR+ L++ L +
Sbjct: 144 HIAIGAPGRVKHLIDKGYLKMD 165
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 101 bits (242), Expect = 2e-20
Identities = 53/140 (37%), Positives = 86/140 (61%)
Frame = +1
Query: 229 SIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFV 408
S + F D+ LK E+L I + G+E PS +Q E IP A+ G DIL +AK+G GK+ ++
Sbjct: 78 STKGNEFEDYCLKRELLIGIFEMGWE-PSSIQEESIPIALSGRDILARAKNGTGKSGAYL 136
Query: 409 LATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
+ L++L+ + ++ +V+ TRELA Q+S+ + SK+M G +V GG + +D+ +
Sbjct: 137 IPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL-RDDVM 195
Query: 589 LKTACPHIVVGTPGRILALV 648
H+V+ TPGRIL L+
Sbjct: 196 RLDDTGHVVIATPGRILDLI 215
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 101 bits (242), Expect = 2e-20
Identities = 50/131 (38%), Positives = 81/131 (61%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
FRD L ++L+A+ D GFE PS +Q + IP + G D++ QA++G GKTA F + +++
Sbjct: 8 FRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIVER 67
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L P + V LV+ TRELA Q+++E + ++ + V+ +GG I++ L+
Sbjct: 68 LVPGQRAVQALVLTPTRELAIQVAEEITKIGRH-ARVKTIAIYGGQSIERQIRSLRFGV- 125
Query: 607 HIVVGTPGRIL 639
+V+GTPGRIL
Sbjct: 126 DVVIGTPGRIL 136
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 101 bits (242), Expect = 2e-20
Identities = 49/143 (34%), Positives = 84/143 (58%)
Frame = +1
Query: 244 GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ 423
GF D L I A+ + G+ +P+ VQ A+ G D++ ++K+G GKTA F L L+
Sbjct: 30 GFDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLE 89
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
++ E V L++C TRELA Q++ E + +K+ G++++ +GG +++ E+ L+
Sbjct: 90 KIPADERRVRALILCPTRELALQVADELKMLAKH-KGLKIAAIYGGASMKQQEDALEEGT 148
Query: 604 PHIVVGTPGRILALVNSKKLNFE 672
P I+VGTPGR+ +N L +
Sbjct: 149 P-IIVGTPGRVFDHINRGNLKLD 170
>UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Polynucleobacter sp. QLW-P1DMWA-1
Length = 500
Score = 101 bits (242), Expect = 2e-20
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 11/170 (6%)
Frame = +1
Query: 205 KEVKGSYVSIHSSG--FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAK 378
KE K S+G F++F L +L+ + + GF + VQ + IP A+ G D+L ++
Sbjct: 5 KETKIESKDSKSTGTEFQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGGDLLVSSQ 64
Query: 379 SGMGKTAVFVLATLQQL---EPSESHV------YVLVMCHTRELAFQISKEYERFSKYMS 531
+G GKTA F+L + QL P+ S V VLV+C TRELA Q++ + + M
Sbjct: 65 TGSGKTAAFLLPLINQLIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLVRGMK 124
Query: 532 GVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
G+R++ GGMP K + LK A +VV TPGR+L L +SK + + K
Sbjct: 125 GIRIATVMGGMPYGKQIQALKGAL--LVVATPGRLLDLCDSKAIRLDDVK 172
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 101 bits (241), Expect = 2e-20
Identities = 49/140 (35%), Positives = 79/140 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L ++LR I GFE PS +Q + I +LG D+L QA+SG GKT F + LQ+
Sbjct: 58 FEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQR 117
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++P++ V+++ RELA QI + +Y++ + GG Q+ E K
Sbjct: 118 IDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLN-IEAFCCIGGTSTQETREKCKQGV- 175
Query: 607 HIVVGTPGRILALVNSKKLN 666
HI++ TPGR++ ++ +K L+
Sbjct: 176 HIIIATPGRLIDMMKNKYLD 195
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 100 bits (240), Expect = 3e-20
Identities = 57/150 (38%), Positives = 74/150 (49%)
Frame = +1
Query: 217 GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 396
G V + F LL +L + GFE PS VQ + IP G+D++ QAKSG GKT
Sbjct: 55 GDVVLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 114
Query: 397 AVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 576
VF L L +L++ TRE+A QI M G+ VF GG P+ +
Sbjct: 115 CVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 174
Query: 577 DEEVLKTACPHIVVGTPGRILALVNSKKLN 666
D+ LK HI VG+PGRI L+ LN
Sbjct: 175 DKTRLKKC--HIAVGSPGRIKQLIELDYLN 202
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 100 bits (240), Expect = 3e-20
Identities = 50/135 (37%), Positives = 78/135 (57%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L P + I G+ + VQ + +P + G+D++ QA +G GKTA F L LQ+L+P+
Sbjct: 33 LSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQKLDPAL 92
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
+ LV+C TRELA Q+ K+ + + + +++ V GGMP+ L+ PH+VVG
Sbjct: 93 TRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPHVVVG 152
Query: 622 TPGRILALVNSKKLN 666
TPGRI L + L+
Sbjct: 153 TPGRIQELARKRALH 167
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 100 bits (239), Expect = 4e-20
Identities = 57/149 (38%), Positives = 81/149 (54%)
Frame = +1
Query: 226 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 405
+S S+GF L +LRAI + G+E PS +Q + IP + G D+L A++G GKTA F
Sbjct: 1 MSESSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAF 60
Query: 406 VLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
L L + + VLV+ TRELA Q++ E +SK+ S V+V+ +GG
Sbjct: 61 TLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFR 120
Query: 586 VLKTACPHIVVGTPGRILALVNSKKLNFE 672
LK P VVGTPGR++ + L E
Sbjct: 121 ALKQG-PQWVVGTPGRVMDHIRRGTLKLE 148
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 100 bits (239), Expect = 4e-20
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQ 423
F L +LRAI+D GFE+P+EVQ + IP + +D++ A++G GKTA F +Q
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFPVIQ 63
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
+++ + + L++ TREL QI+ E + +SKY G+ V +GG I + +K
Sbjct: 64 KIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIKRGA 123
Query: 604 PHIVVGTPGRILALVNSK 657
I+V TPGR+ ++N +
Sbjct: 124 -QIIVATPGRMQDMINRR 140
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 100 bits (239), Expect = 4e-20
Identities = 50/145 (34%), Positives = 80/145 (55%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
S F L ++++ + G+E +E+Q +P + G D++ QAK+G GKTA F L
Sbjct: 3 SKDFASLPLSEDLIKNVASLGYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGV 62
Query: 418 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L +L + + VL++C TREL Q+SK ++ M +++ GGMP + + +
Sbjct: 63 LSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKSVAH 122
Query: 598 ACPHIVVGTPGRILALVNSKKLNFE 672
HIVVGTPGRIL +N L+ +
Sbjct: 123 GA-HIVVGTPGRILKHLNKSSLSLD 146
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 100 bits (239), Expect = 4e-20
Identities = 51/139 (36%), Positives = 87/139 (62%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F++ + ++++ GF+ P+ +Q + IP A+ G+DIL QA++G GKT F + +++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEK 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ + V L++ TRELA Q++++ FS+ GV+V FGGMPI++ + LK P
Sbjct: 64 VVGKQG-VQSLILAPTRELAMQVAEQLREFSR-GQGVQVVTVFGGMPIERQIKALKKG-P 120
Query: 607 HIVVGTPGRILALVNSKKL 663
IVVGTPGR++ +N + L
Sbjct: 121 QIVVGTPGRVIDHLNRRTL 139
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 99 bits (238), Expect = 5e-20
Identities = 49/135 (36%), Positives = 83/135 (61%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L E+ +A+ D G++ P+ +Q + IP A+ G DIL QA +G GKT F + +++L+ +
Sbjct: 7 LSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVEKLQKGK 66
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
V LV+ TRELA Q+ ++ +KY + VF+GG ++++ ++L+ I++G
Sbjct: 67 PDVKALVLTPTRELAIQVKEQIYMLTKY-KRLSSYVFYGGTSVKQNLDILQNKNVDILIG 125
Query: 622 TPGRILALVNSKKLN 666
TPGRI L++ K LN
Sbjct: 126 TPGRIKDLIDRKALN 140
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 99 bits (238), Expect = 5e-20
Identities = 56/150 (37%), Positives = 74/150 (49%)
Frame = +1
Query: 217 GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 396
G + + F LL +L + GFE PS VQ + IP G+D++ QAKSG GKT
Sbjct: 54 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 113
Query: 397 AVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 576
VF L L +L++ TRE+A QI M G+ VF GG P+ +
Sbjct: 114 CVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 173
Query: 577 DEEVLKTACPHIVVGTPGRILALVNSKKLN 666
D+ LK HI VG+PGRI L+ LN
Sbjct: 174 DKTRLKKC--HIAVGSPGRIKQLIELDYLN 201
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 99.5 bits (237), Expect = 7e-20
Identities = 53/134 (39%), Positives = 71/134 (52%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F LL +L + GF+ PS +Q + IP G+D++ QAKSG GKT VF L
Sbjct: 28 FSSLLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVFTTIALDS 87
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L + VLV+ TRE+A QI M G+ VF GG PI +D++ LK
Sbjct: 88 LILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRPISQDKQHLKKC-- 145
Query: 607 HIVVGTPGRILALV 648
HI +G+PGRI L+
Sbjct: 146 HIAIGSPGRIKQLI 159
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 99.1 bits (236), Expect = 9e-20
Identities = 58/139 (41%), Positives = 83/139 (59%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF LK I A+ + GF+ PS VQ + IP + G D++ QA++G GKTA F L +
Sbjct: 3 FTDFNLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIMSM 62
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ ++ V LV+ TRELA Q+S E RF K +SG++ + +GG K E +K A
Sbjct: 63 MK-ADGSVEGLVIVPTRELAMQVSDELFRFGK-LSGLKTATVYGGTAYGKQIERIKQA-- 118
Query: 607 HIVVGTPGRILALVNSKKL 663
IVV TPGR+ L+ S K+
Sbjct: 119 SIVVATPGRLQDLLMSGKI 137
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 98.7 bits (235), Expect = 1e-19
Identities = 51/145 (35%), Positives = 81/145 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L +++A+ G+E PS +Q IP + G D+L QA++G GKTA F L L +
Sbjct: 17 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ VLV+ TRELA Q+++ ++R++ +SG RV +GG + LK
Sbjct: 77 TVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGV- 135
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
H++VGTPGR++ + L+ K
Sbjct: 136 HVIVGTPGRVIDHLERGTLDLSELK 160
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 98.7 bits (235), Expect = 1e-19
Identities = 53/142 (37%), Positives = 78/142 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L IL A+ + GF P+ +Q IP + G D L +A++G GKTA F L L +
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L S+ +VM TRELA Q++ E + + + G++V +GG I LK+
Sbjct: 88 LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA- 146
Query: 607 HIVVGTPGRILALVNSKKLNFE 672
HIVVGTPGR+ L+ +L+ +
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLD 168
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 98.7 bits (235), Expect = 1e-19
Identities = 51/152 (33%), Positives = 81/152 (53%)
Frame = +1
Query: 226 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 405
V + + F L PE+L + + GFE + +Q E IP + G DI+ QAK+G GKTA F
Sbjct: 42 VPVSQNEFSTLPLSPELLTVVQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAF 101
Query: 406 VLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
L L ++ + + L++C TRELA Q+ E + + + G++V GG ++ +
Sbjct: 102 SLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQAD 161
Query: 586 VLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
L+ IVVGTPGR+ V +++ K
Sbjct: 162 ALENGV-QIVVGTPGRLADFVGRNRIDLSAVK 192
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 98.7 bits (235), Expect = 1e-19
Identities = 45/140 (32%), Positives = 84/140 (60%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
+ P I +A+ G S +Q + +P A+ G D++ QA++G GKT FV+ L+++E ++
Sbjct: 11 INPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPALEKIEVND 70
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
+++C TRELA Q++++ +K + ++V+ GG P+ + LK + PHI+VG
Sbjct: 71 FSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKHS-PHIIVG 129
Query: 622 TPGRILALVNSKKLNFETFK 681
TPGR++ V ++++ K
Sbjct: 130 TPGRVMDHVEKRRIDLRNVK 149
>UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46;
n=2; Caenorhabditis elegans|Rep: Putative
uncharacterized protein mel-46 - Caenorhabditis elegans
Length = 973
Score = 98.7 bits (235), Expect = 1e-19
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Frame = +1
Query: 214 KGSYVSIHSS-GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 390
+GS + + S+ F ++ + L + + F+ PS VQ IP +LG D+L QAKSG G
Sbjct: 12 RGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTG 71
Query: 391 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 570
KT VF + ++ L+ SH+ +++ TRE++ QI + + + +G R SV+ GG
Sbjct: 72 KTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP--TGARTSVYVGGSAH 129
Query: 571 QKDEEVLKTACPHIVVGTPGRILALVNSKKLN 666
+ + LK P IV+GTPGRI LV +N
Sbjct: 130 KLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMN 161
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 98.3 bits (234), Expect = 2e-19
Identities = 54/145 (37%), Positives = 79/145 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L +L + F P+ +Q + IP + G D+L +A++G GKTA F L L +
Sbjct: 10 FNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPALAK 69
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ S VLV+ TRELA Q+++ E F+ M GV V+ +GG P + LK
Sbjct: 70 IDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQGTA 129
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
IVVGTPGR++ L+N L + K
Sbjct: 130 -IVVGTPGRLIDLLNKNVLQLDGLK 153
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 98.3 bits (234), Expect = 2e-19
Identities = 47/133 (35%), Positives = 77/133 (57%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
+ GF + P +L AI G+E PS +Q + IP + G D++ QA++G GKTA F L
Sbjct: 22 TGGFAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPM 81
Query: 418 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L +++P+ +L++ TRELA Q++ +E ++ + GV V +GG P+ + L+
Sbjct: 82 LSRIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQ 141
Query: 598 ACPHIVVGTPGRI 636
I+V TPGR+
Sbjct: 142 GA-QILVATPGRL 153
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 98.3 bits (234), Expect = 2e-19
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF L I+R+I D GF + S +Q E +P + G DI+ +A++G GKTA F++ LQ+
Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQK 159
Query: 427 L---EPSE---SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
L +P E S L++ TRELA QI+K+ + SKY + + + GG+ K +E
Sbjct: 160 LLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKY-ADLNIVTVLGGVDYDKQKEQ 218
Query: 589 LKTACPHIVVGTPGRIL 639
L+ +VV TPGR+L
Sbjct: 219 LENEVVDVVVATPGRLL 235
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 98.3 bits (234), Expect = 2e-19
Identities = 52/142 (36%), Positives = 83/142 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F++ L E+++AI GFE + +Q + IP ++ D++ QA++G GKTA F + +++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ S V LV+ TRELA Q+S+E + + VRV +GG I++ LK P
Sbjct: 64 VNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKH-P 121
Query: 607 HIVVGTPGRILALVNSKKLNFE 672
H++VGTPGRI+ +N L E
Sbjct: 122 HVIVGTPGRIIDHINRGTLRLE 143
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 97.9 bits (233), Expect = 2e-19
Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F F + +A+ D F PS +Q + IP + G D + A++G GKTA F L L
Sbjct: 6 SNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPIL 65
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
Q L P S L++ TRELA Q+++++E SKY V ++V GG + + L++
Sbjct: 66 QNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125
Query: 601 CPHIVVGTPGRILALVNSKKL---NFETF 678
+VVGTPGRIL ++ L N +TF
Sbjct: 126 A-QVVVGTPGRILDHIDKGTLLLNNLKTF 153
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 97.5 bits (232), Expect = 3e-19
Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 8/149 (5%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L EIL A+ D G+ +P+ +Q + IP + G D++ A++G GKTA F L L +
Sbjct: 7 FAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLLYR 66
Query: 427 LE--------PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
L+ P+ V L+M TRELA QI + ++ KY++ +R +V FGG+ I+
Sbjct: 67 LQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTAVVFGGINIEPQI 125
Query: 583 EVLKTACPHIVVGTPGRILALVNSKKLNF 669
L+ A I+V TPGR+L LV K +NF
Sbjct: 126 AALQ-AGVEILVATPGRLLDLVEQKAVNF 153
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 97.1 bits (231), Expect = 4e-19
Identities = 51/139 (36%), Positives = 81/139 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + + EI +AI++ GFE PS +Q + IP + G D++ QA++G GKTA F + +++
Sbjct: 8 FNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVVEK 67
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ HV L++ TRELA Q+S E ++ SK+ +R +GG I + LK
Sbjct: 68 VSTGR-HVQALILTPTRELAIQVSGEIQKLSKHKK-IRTLPIYGGQSIVHQIKALKQGV- 124
Query: 607 HIVVGTPGRILALVNSKKL 663
+V+GTPGRI+ + K L
Sbjct: 125 QVVIGTPGRIIDHLRRKTL 143
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 97.1 bits (231), Expect = 4e-19
Identities = 51/148 (34%), Positives = 81/148 (54%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
++ F L E L + + G+ + VQ +P + G D+ +AK+G GKTA F +
Sbjct: 3 TTSFSSLALPAEQLSNLNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGL 62
Query: 418 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L ++ S+ LV+C TRELA Q+SKE R +++ +++ GG P+ + + L
Sbjct: 63 LDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVH 122
Query: 598 ACPHIVVGTPGRILALVNSKKLNFETFK 681
A PHIVVGTPGRI + + L ++ K
Sbjct: 123 A-PHIVVGTPGRIQDHLRKQSLALDSLK 149
>UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=1; Exiguobacterium sibiricum
255-15|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Exiguobacterium sibiricum 255-15
Length = 391
Score = 97.1 bits (231), Expect = 4e-19
Identities = 53/143 (37%), Positives = 82/143 (57%)
Frame = +1
Query: 253 DFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE 432
DF+ KP I A FE VQ + IP D+L +A +G GKT +V+ L+ ++
Sbjct: 2 DFM-KPFITEAWERARFEKMMPVQEQAIPLLRERKDVLVEAPTGTGKTLAYVIPALELID 60
Query: 433 PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 612
+E H+ V++ TREL QI + + FS+ SG++ F GG+ +++ E LK P I
Sbjct: 61 ENEPHIQVVITAPTRELVMQIHQVIQLFSQ-GSGIKSGAFIGGVELKRQHERLKKK-PQI 118
Query: 613 VVGTPGRILALVNSKKLNFETFK 681
+VGTPGR++ L++SKK+ K
Sbjct: 119 IVGTPGRLVELIDSKKMKMHKVK 141
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 97.1 bits (231), Expect = 4e-19
Identities = 49/145 (33%), Positives = 79/145 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L +LR + + G+E PS +Q IP + D+L QA++G GKTA F L L +
Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ ++ LV+ TRELA Q+++ ++R++ Y+ G V +GG L+
Sbjct: 69 IDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGV- 127
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
H+VVGTPGR++ + L+ K
Sbjct: 128 HVVVGTPGRVIDHLEKGSLDLSRIK 152
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 96.7 bits (230), Expect = 5e-19
Identities = 50/145 (34%), Positives = 82/145 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F ++ L E+ RA+ G+EHP+EVQ E IP A+ D++ ++++G GKTA F + +
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+E E+ LV+ TRELA Q+ ++ ++ ++ + +G P + + LK
Sbjct: 66 VEWEENKPQALVLTPTRELAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQK-T 123
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
HIVVGTPGR+L + L+ E K
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERLK 148
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 96.3 bits (229), Expect = 7e-19
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+GF + L+PE+LR++ G+E P+ +Q E +P V G D+L QA +G GKTA F L L
Sbjct: 57 AGFAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLL 116
Query: 421 QQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
+L + + LV+ TRELA Q+S+ R+ + + G RV +GG PI + L
Sbjct: 117 HRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDL-GARVLPVYGGAPIGRQVRAL 175
Query: 592 KTACPHIVVGTPGRIL 639
+VV TPGR L
Sbjct: 176 VQGV-DVVVATPGRAL 190
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 95.9 bits (228), Expect = 9e-19
Identities = 49/137 (35%), Positives = 79/137 (57%)
Frame = +1
Query: 271 EILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHV 450
+IL + CGF+ PS +Q + IP G D++ +AKSG GKT VF + +L+ ++ S V
Sbjct: 6 KILDGLSVCGFQRPSPIQLKAIPLGRCGFDLIMRAKSGTGKTLVFCIISLEMIDIDISSV 65
Query: 451 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 630
VL++ TRE+A QI++ + + ++V VF GG+ I+ D++ + I VG PG
Sbjct: 66 QVLILAPTREIAVQIAQVFSSVGCEIKDLKVEVFIGGLAIENDKKKVNNC--QIAVGAPG 123
Query: 631 RILALVNSKKLNFETFK 681
RI L++ L E +
Sbjct: 124 RIRHLIDKGFLKVENVR 140
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 95.9 bits (228), Expect = 9e-19
Identities = 49/145 (33%), Positives = 79/145 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L P + R I G+ + +E+Q + IP A+ DI+ ++ +G GKT F++ LQ
Sbjct: 3 FNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQN 62
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L +++C T ELA QI ++ +F+ Y+ GV ++ GG IQ+ L+ +
Sbjct: 63 LNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS-- 120
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
+I+VGTPGRI +N K L + K
Sbjct: 121 NIIVGTPGRIADHINRKTLRLDKIK 145
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 95.9 bits (228), Expect = 9e-19
Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F F PEILRAI +CG+++ + VQ + IP G D+L A++G GKTA F L LQ+
Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62
Query: 427 LEP-----SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
+ S+ L++ TRELA Q++ +SK+M+ + V +GGM + + L
Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMN-ISVLTIYGGMKMATQAQKL 121
Query: 592 KTACPHIVVGTPGRIL 639
K I+V TPGR+L
Sbjct: 122 KQGA-DIIVATPGRLL 136
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 95.9 bits (228), Expect = 9e-19
Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
+ D L E+ A+ + PS +Q IP A+ G D+L QA++G GKTA F + +++
Sbjct: 6 YADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIER 65
Query: 427 LE--PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
LE P+ + L++ TRELA Q+ E + + + + V +GG P++ E LK A
Sbjct: 66 LEHGPNSRNPQALILTPTRELAVQVRDEIAKLT-HGQRINVVAVYGGKPLRSQMEKLKRA 124
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFK 681
PHIVVGTPGR++ L+ + L E +
Sbjct: 125 -PHIVVGTPGRVIDLMTRRALQLEMLR 150
>UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
Culicidae|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 1061
Score = 95.5 bits (227), Expect = 1e-18
Identities = 55/145 (37%), Positives = 71/145 (48%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L +LR + F HPS +Q IP A LG+D+L QAKSG GKT VF + +
Sbjct: 24 FSKMFLSEPVLRGLTRNNFTHPSPIQARAIPLAKLGLDLLVQAKSGTGKTLVFTVLITEN 83
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
P L + TRE+A QI R + R F GG+ I +D + L++
Sbjct: 84 HNPDVMFPQSLTVVPTREIAVQIEDVLNRIGYSVPNFRAKSFIGGLDISQDRKNLQSC-- 141
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
VVGTPGRI L+ S LN K
Sbjct: 142 SAVVGTPGRINHLIKSNVLNTSQIK 166
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 95.1 bits (226), Expect = 2e-18
Identities = 47/130 (36%), Positives = 77/130 (59%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D + P+I+ A + GF+HP+ +Q + IP+A+ D++ A++G GKTA F + LQ
Sbjct: 106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQA 165
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L + + V+ TRELA+QIS++ E + GVR + GGM + + + + P
Sbjct: 166 LWDNPKPFFACVLAPTRELAYQISQQVEALGSTI-GVRSATIVGGMDMM-SQSIALSKRP 223
Query: 607 HIVVGTPGRI 636
H++V TPGR+
Sbjct: 224 HVIVATPGRL 233
>UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase mak5 - Schizosaccharomyces pombe (Fission
yeast)
Length = 648
Score = 95.1 bits (226), Expect = 2e-18
Identities = 55/151 (36%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 421 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 595 TACPHIVVGTPGRILALVNSKKL--NFETFK 681
PH+VV TPGR+ +++N L NF+ K
Sbjct: 241 KH-PHVVVATPGRLWSVINENNLTGNFKKIK 270
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 94.7 bits (225), Expect = 2e-18
Identities = 49/136 (36%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Frame = +1
Query: 235 HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA 414
+ +GF DF IL ++ + G+++P+ +Q IP+ +LG D+L QA++G GKTA F L
Sbjct: 49 NENGFLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALP 108
Query: 415 TLQQL-EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
+++L + E + VLVM TRELA Q+++ ++ +S + + +GG + L
Sbjct: 109 LIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYAL 168
Query: 592 KTACPHIVVGTPGRIL 639
K +VVGTPGRI+
Sbjct: 169 KRKV-DVVVGTPGRIM 183
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 94.7 bits (225), Expect = 2e-18
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQ 423
F D L +L+++ + PSE+Q + IP + +++ A++G GKTA F L LQ
Sbjct: 3 FSDLGLNAALLQSLSENNISSPSEIQQKAIPVILNSTKNVVGVAQTGTGKTAAFGLPVLQ 62
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
Q+ PS VLV+ TREL Q++K+ FS+Y+ + +GG I++ + L+T
Sbjct: 63 QINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGKKIEEQIKKLETP- 121
Query: 604 PHIVVGTPGRILALVNSKKLNFETFK 681
HI+V TPGR+L L+ K +N K
Sbjct: 122 KHILVATPGRLLDLIARKAVNLSNLK 147
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 94.7 bits (225), Expect = 2e-18
Identities = 50/131 (38%), Positives = 78/131 (59%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F +F + +I RA+ D GFE + +Q +P + GMD++ +A++G GKTA F + L+
Sbjct: 6 FSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLEN 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
LE +E L++C TREL Q+S+E +R KYM V+V +GG I L+
Sbjct: 66 LE-AERVPQALIICPTRELCLQVSEEIKRIGKYMK-VKVLAVYGGQSIGNQIAQLRRGV- 122
Query: 607 HIVVGTPGRIL 639
H++V TPGR++
Sbjct: 123 HVIVATPGRLI 133
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 94.3 bits (224), Expect = 3e-18
Identities = 46/146 (31%), Positives = 83/146 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L P +L+ + G+E P+ +Q + I Q + G D+L A++G GKTA F L L +
Sbjct: 7 FADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLSR 66
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ +++ LV+C TRELA Q+++ ++ +++ + V +GG ++ LK P
Sbjct: 67 IDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQN-P 125
Query: 607 HIVVGTPGRILALVNSKKLNFETFKN 684
++VGTPGR++ + L+ K+
Sbjct: 126 QVIVGTPGRVMDHLRRGTLDLSDLKH 151
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 94.3 bits (224), Expect = 3e-18
Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLEPS 438
L +L+AI D GFE PS++Q E IPQ + D++ A++G GKTA F LQ ++ S
Sbjct: 8 LNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPLLQNIDAS 67
Query: 439 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 618
L++ TREL QI+ E + ++K++ GVRV +GG IQ+ + IVV
Sbjct: 68 SKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQAREISRGA-QIVV 126
Query: 619 GTPGRILALVNSKKLN 666
TPGR+ ++ + ++
Sbjct: 127 ATPGRMQDMMRRRMVD 142
>UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Rep:
DEAD-box helicase 2 - Plasmodium falciparum
Length = 562
Score = 94.3 bits (224), Expect = 3e-18
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D + EIL +I + G++ P+E+Q E +P A L DI+ +++G GKTA F++ LQ
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L+ ++ Y LV+ TREL QIS+ ++ + + + +GG+ I L P
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLL-INICTIYGGVDIVTQSLNLAKK-P 275
Query: 607 HIVVGTPGRIL-ALVNSKKLNFETFK 681
+++V TPGRIL L N+K N + K
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLK 301
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 93.9 bits (223), Expect = 3e-18
Identities = 48/145 (33%), Positives = 79/145 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F LL +I + + GF+ PS +Q + IP G D++ ++KSG GKT VF L+
Sbjct: 26 FASLLLPDDIKQGLSVSGFKKPSPIQFKAIPLGRCGFDLIVKSKSGTGKTLVFSTIALET 85
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ ++ H+ VL++ TRE+A QI +++G+++ F GG P++ D + K++
Sbjct: 86 VNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVNGLKIESFIGGRPLEDD--LKKSSKC 143
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
HI VG PGR+ L+ L K
Sbjct: 144 HIAVGAPGRVKHLLKMGALTTNLVK 168
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 93.9 bits (223), Expect = 3e-18
Identities = 46/133 (34%), Positives = 75/133 (56%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
SGF F +L+ + D G+ PS +Q P+ +LG D++ QA++G GKTA F L L
Sbjct: 71 SGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLL 130
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
++LE + VLV+ TRELA Q++ ++ ++ ++V +GG + L+
Sbjct: 131 ERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRG 190
Query: 601 CPHIVVGTPGRIL 639
+VVGTPGR++
Sbjct: 191 V-DVVVGTPGRVM 202
>UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Cystobacterineae|Rep: DEAD/DEAH box helicase domain
protein - Anaeromyxobacter sp. Fw109-5
Length = 455
Score = 93.9 bits (223), Expect = 3e-18
Identities = 52/134 (38%), Positives = 78/134 (58%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
++ F + L PE L A+ GFEHP+ +Q + IP A+ G D++ A +G GKTA F+L
Sbjct: 3 TTSFAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPL 62
Query: 418 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
+ +L + LV+ TRELA QI +E ERF + VR +V GG+ + + E L+
Sbjct: 63 IDRL-AGKPGTRALVLAPTRELALQIGEELERFG-HARRVRGAVIIGGVGMAQQAEALRQ 120
Query: 598 ACPHIVVGTPGRIL 639
IV+ TPGR++
Sbjct: 121 K-REIVIATPGRLV 133
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 93.9 bits (223), Expect = 3e-18
Identities = 50/148 (33%), Positives = 78/148 (52%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F L IL + G+E PS +Q +CI + DI+ QA++G GKTA FVL L
Sbjct: 12 SKFERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLL 71
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
++ + + +L++ TRELA Q+S+ + +++ M G V +GG LK
Sbjct: 72 DKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKRG 131
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFKN 684
H +VGTPGR++ + K L + K+
Sbjct: 132 V-HAIVGTPGRVMDHIEKKTLKLDNLKS 158
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 93.9 bits (223), Expect = 3e-18
Identities = 47/139 (33%), Positives = 82/139 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+DF L ++++AI GFE + +Q + IP + D++ QA++G GKTA F + +++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ P ++ +V+ TRELA Q+S+E + + +V +GG I + LK P
Sbjct: 65 INPESPNIQAIVIAPTRELAIQVSEELYKIGQ-DKRAKVLPIYGGQDIGRQIRALKKN-P 122
Query: 607 HIVVGTPGRILALVNSKKL 663
+I+VGTPGR+L +N + +
Sbjct: 123 NIIVGTPGRLLDHINRRTI 141
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 93.9 bits (223), Expect = 3e-18
Identities = 48/127 (37%), Positives = 72/127 (56%)
Frame = +1
Query: 259 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS 438
+L P L + + G+ + VQ +P + G D+ QAK+G GKTA F L LQQ++ S
Sbjct: 9 VLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS 68
Query: 439 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 618
LV+C TRELA Q++ E R ++++ ++ GG P + L+ A PHI+V
Sbjct: 69 LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA-PHIIV 127
Query: 619 GTPGRIL 639
TPGR+L
Sbjct: 128 ATPGRLL 134
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 93.5 bits (222), Expect = 5e-18
Identities = 51/145 (35%), Positives = 79/145 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + + E + + GF P+ +Q + IPQ + G D++ Q+++G GKTA F L L++
Sbjct: 5 FPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILER 64
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L+P + V +V+ TRELA Q+ +F SG+R +GG I + LK
Sbjct: 65 LDPQQKAVQAIVLTPTRELAIQVHDAMAQFVG-NSGLRTLAIYGGQSIDRQMLQLKRGV- 122
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
HIVVGTPGR++ L+ L + K
Sbjct: 123 HIVVGTPGRVIDLLERGNLKLDQVK 147
>UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;
n=5; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 789
Score = 93.5 bits (222), Expect = 5e-18
Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Frame = +1
Query: 226 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 405
VS H+ F + L +LRA G++ P+ +Q CIP A+ G D+ A +G GKTA F
Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAF 221
Query: 406 VLATLQQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 576
L TL++L V+ VL++ TRELA QI + +++ + ++ + GG+ +++
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF-TDIKCGLIVGGLSVRE 280
Query: 577 DEEVLKTACPHIVVGTPGRIL-ALVNSKKLNFE 672
E VL+ + P IVV TPGR++ L NS ++ +
Sbjct: 281 QEVVLR-SMPDIVVATPGRMIDHLRNSMSVDLD 312
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 93.1 bits (221), Expect = 6e-18
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 4/149 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L E +R+I + G+ P+ +Q IP+ + G DI+ A++G GKTA F+L ++
Sbjct: 26 FEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIEL 85
Query: 427 L----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L +P V+ LV+ TRELA Q+ + ++KY++ +R FGG+ I+ + L+
Sbjct: 86 LRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLA-LRSDAVFGGVSIRPQVKRLQ 144
Query: 595 TACPHIVVGTPGRILALVNSKKLNFETFK 681
I+V TPGR+L L+N K + F+ K
Sbjct: 145 GGV-DILVATPGRLLDLINQKMIRFDNLK 172
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 93.1 bits (221), Expect = 6e-18
Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+GF F L P ++ A+ D + P+++Q IP A+ G DI+ Q+++G GKT F+L +
Sbjct: 2 NGFSHFDLHPFVVEALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPIV 61
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYER-FSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
Q + P + +++ TRELA+QI +E + K ++ S+ GGM ++ +K
Sbjct: 62 QNVNPELQEMQAIIVAPTRELAWQIHEELKSILVKQPDYIKTSLITGGMDRERQIGRVKV 121
Query: 598 ACPHIVVGTPGRILALVNSKKL 663
+ P IV+GTPGRIL L + L
Sbjct: 122 S-PQIVIGTPGRILDLFKEQAL 142
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 93.1 bits (221), Expect = 6e-18
Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
FR+ L IL+A+ + G+E PS +Q + IP A+ G D+L A++G GKT F LQ+
Sbjct: 3 FRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPILQR 62
Query: 427 LE---PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L P+ + L++ TRELA QI + +E + K++ +R +V FGG+ Q + LK
Sbjct: 63 LGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLP-LRSAVIFGGVGQQPQVDKLKK 121
Query: 598 ACPHIVVGTPGRILAL 645
I+V TPGR+L L
Sbjct: 122 GV-DILVATPGRLLDL 136
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 93.1 bits (221), Expect = 6e-18
Identities = 49/131 (37%), Positives = 73/131 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F +F L PE+L +I + P+ +Q IP A+ G DI+ A++G GKTA F + LQ
Sbjct: 100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQT 159
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L + Y LV+ TRELAFQI + ++ M G+R GGM + + L P
Sbjct: 160 LYTAAQPYYALVLAPTRELAFQIKETFDALGSSM-GLRSVCIIGGMSMMEQARDLMRK-P 217
Query: 607 HIVVGTPGRIL 639
H+++ TPGR++
Sbjct: 218 HVIIATPGRLI 228
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 92.7 bits (220), Expect = 8e-18
Identities = 51/145 (35%), Positives = 82/145 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F +K EIL+++ + GFE P+++Q +P A G DI+ QA++G GKTA F + L
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L+ S + + LV+ TRELA QI + KY ++++ GG+ +K + L +
Sbjct: 63 LDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCS-KIALILGGVSYEKQKAALNSGV- 120
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
+IVV TPGR+ L+ K++ K
Sbjct: 121 NIVVATPGRLEDLLAQNKIDLSHIK 145
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 92.7 bits (220), Expect = 8e-18
Identities = 51/140 (36%), Positives = 84/140 (60%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
LK ++L+ I + GFE P+ +Q + IP A+ G+D++ QA++G GKTA F + L ++ E
Sbjct: 11 LKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILNRVIKGE 70
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
+ LV+C TRELA Q+++E S+ M ++V +GG I+ L+ P I+VG
Sbjct: 71 G-LQALVLCPTRELAVQVTEEISSLSRRMR-IQVLAIYGGQSIELQLRSLRRN-PEIIVG 127
Query: 622 TPGRILALVNSKKLNFETFK 681
TPGR++ +N ++ K
Sbjct: 128 TPGRLMDHMNRGTISLSPLK 147
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 92.7 bits (220), Expect = 8e-18
Identities = 50/140 (35%), Positives = 73/140 (52%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L+ ++LR I GFE PS +Q I Q + G D++ Q++SG GKTA F ++ LQ L+
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
L++ TRELA QI K YM+ V+ GG + +D L H+V G
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYG-QHVVAG 162
Query: 622 TPGRILALVNSKKLNFETFK 681
TPGR+ ++ + L K
Sbjct: 163 TPGRVFDMIRRRSLRTRAIK 182
>UniRef50_A4QTR1 Cluster: ATP-dependent RNA helicase DBP9; n=4;
Ascomycota|Rep: ATP-dependent RNA helicase DBP9 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 636
Score = 92.7 bits (220), Expect = 8e-18
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
SS F D L P +L+A+ F+ P+ VQ + IP A+ G D+L +AK+G GKTA +VL
Sbjct: 42 SSSFADLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPI 101
Query: 418 LQ------QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMS-GVRVSVFFGGMPIQK 576
LQ Q+ P +++ L++ TREL Q++KE ERFS + + V+V +
Sbjct: 102 LQAVLKRKQINPGATYISSLILVPTRELTVQVTKEVERFSAFCAKEVQVVGLTDKVSDAV 161
Query: 577 DEEVLKTACPHIVVGTPGRILALVNSKKLNFE 672
+L+++ P IVV TP V+S L+ +
Sbjct: 162 QRSLLQSSSPDIVVSTPSTAWRNVDSGALSLD 193
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 92.3 bits (219), Expect = 1e-17
Identities = 48/145 (33%), Positives = 79/145 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L +L A++ GF +++Q IP + G D+L +A++G GKTA F L L +
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ S ++V+ TRELA Q+++ E F K M G+RV+ +GG + L+
Sbjct: 77 IDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA- 135
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
+VVGTPGR++ + K L + +
Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELR 160
>UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=3; Clostridium perfringens|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
Length = 405
Score = 92.3 bits (219), Expect = 1e-17
Identities = 44/141 (31%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L E+L+++V G E P+++Q + IP+ + G +++ +A++G GKT ++L +++++ S+
Sbjct: 9 LSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 68
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYM-SGVRVSVFFGGMPIQKDEEVLKTACPHIVV 618
+ + +++ T EL QI+ + + + + G I++ E LK PHI+V
Sbjct: 69 NEMQAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNK-PHILV 127
Query: 619 GTPGRILALVNSKKLNFETFK 681
GT GRIL L+N KK+ T K
Sbjct: 128 GTTGRILELINKKKITTNTIK 148
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 91.9 bits (218), Expect = 1e-17
Identities = 53/145 (36%), Positives = 77/145 (53%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF LK +++ +V GF P+ +Q + IP + G D++ QA++G GKTA F L L
Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ S+ V LV+ TRELA Q+ +S G V V +GG Q L+
Sbjct: 117 IDFSKKCVQALVLAPTRELAQQVGDALATYSG-DDGRNVLVVYGGSSYQAQVGGLRRGA- 174
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
+VVGTPGR+L L+ L + K
Sbjct: 175 RVVVGTPGRLLDLIRQGSLKLDQLK 199
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 91.9 bits (218), Expect = 1e-17
Identities = 50/137 (36%), Positives = 80/137 (58%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ L +L+A+ D GFE P+ +Q E IP + G +++ QA +G GKTA ++L LQ+
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ + VL++ TRELA Q++ E + KY+ VR +GG I++ L+
Sbjct: 64 IQRGKK-AQVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGV- 120
Query: 607 HIVVGTPGRILALVNSK 657
++VGTPGRIL + K
Sbjct: 121 EVIVGTPGRILDHIGRK 137
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 91.9 bits (218), Expect = 1e-17
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLEPS 438
L+P I + + GF+ PS +Q + IP + DI+ QA++G GKTA F L +Q++EP
Sbjct: 9 LEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQKIEPG 68
Query: 439 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 618
L++C TRELA Q+++E + F K G+ +GG PI + LK +VV
Sbjct: 69 LKKPQALILCPTRELAIQVNEEIKSFCK-GRGITTVTLYGGAPIMDQKRALKKGV-DLVV 126
Query: 619 GTPGRILALVNSKKLNFETFK 681
TPGR + + KL ++ +
Sbjct: 127 ATPGRCIHFIEDGKLELDSLE 147
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 91.9 bits (218), Expect = 1e-17
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
S+ F D L + RA+ GF+ PS VQ C+P G D++ QAKSG GKT FV+
Sbjct: 36 SASFGDLQLDERLTRALRAAGFDAPSPVQLACVPLGRFGCDVIAQAKSGTGKTMTFVVIA 95
Query: 418 LQQLEPSESHVYVLVMCHTRELAFQISKEY-ERFSKY-------MSGVRVSVFFGGMPIQ 573
L++++ L + TRE A Q + + E K+ G+ + GG+P++
Sbjct: 96 LERVDAGRRRTQALALAPTRECAVQTHECFVEMIEKFKDMDGDARGGIETCLLVGGLPVK 155
Query: 574 KDEEVLKTACPHIVVGTPGR 633
+D L + PH+VVGTPGR
Sbjct: 156 EDRARLASQ-PHVVVGTPGR 174
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 91.9 bits (218), Expect = 1e-17
Identities = 46/131 (35%), Positives = 74/131 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D + P +LRAI D G+E P+ +Q IP + G D++ A++G GKTA F + L +
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ + LV+ TRELA Q+++ + R+ Y+S + V +GG L+
Sbjct: 75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA- 133
Query: 607 HIVVGTPGRIL 639
+VVGTPGR++
Sbjct: 134 QVVVGTPGRMI 144
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 91.5 bits (217), Expect = 2e-17
Identities = 50/145 (34%), Positives = 77/145 (53%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F F L +IL+++ G+ PS VQ E IP+ + G +++ ++K+G GKTA F + +
Sbjct: 5 FEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCEN 64
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ +++ L++ TRELA Q+ E + + VR S FG I+ LK
Sbjct: 65 INVDYNNIQALIVVPTRELALQVKDEISDIGR-LKKVRCSAIFGKQSIKDQIAELKQRV- 122
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
HIVV TPGRIL +N + E K
Sbjct: 123 HIVVATPGRILDHINRGSIKLENVK 147
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 91.5 bits (217), Expect = 2e-17
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 2/142 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + LKP I+ A+ GF P+++Q IP + ++ Q+++G GKT ++L L +
Sbjct: 6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNK 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG--VRVSVFFGGMPIQKDEEVLKTA 600
++P++ V V++ TRELA QI +E + ++ G +R F GG QK + LK
Sbjct: 66 IDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQ 125
Query: 601 CPHIVVGTPGRILALVNSKKLN 666
PH+VVGTPGRI L+ + L+
Sbjct: 126 -PHLVVGTPGRIADLIKEQALS 146
>UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DRS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 752
Score = 91.5 bits (217), Expect = 2e-17
Identities = 48/147 (32%), Positives = 89/147 (60%), Gaps = 4/147 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L +L+ + G+ PS +Q IP A+LG DI+ A +G GKTA F++ +++
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 427 L--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L +P++ + V+V+ TRELA Q++ ++ ++++SG+ + GG+ +++ E++LK+
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKS 352
Query: 598 ACPHIVVGTPGRILALV-NSKKLNFET 675
P IV+ TPGR + + NS N ++
Sbjct: 353 R-PDIVIATPGRFIDHIRNSASFNVDS 378
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 91.1 bits (216), Expect = 2e-17
Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
+S F + L PE+ + + G+E P+ +Q + IP + G D+L +A++G GKTA F L
Sbjct: 3 ASSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPI 62
Query: 418 LQQL--EPSESH--VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
+++L P + + V LV+ TRELA Q++ + + + G+RV +GG+P++ +
Sbjct: 63 IEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIK 121
Query: 586 VLKTACPHIVVGTPGRILALVNSKKLNFE 672
LK I+V TPGR+L L+ K ++ E
Sbjct: 122 RLKRG-TDILVATPGRLLDLLRQKAISLE 149
>UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 variant;
n=9; Coelomata|Rep: DEAD box polypeptide 47 isoform 1
variant - Homo sapiens (Human)
Length = 182
Score = 91.1 bits (216), Expect = 2e-17
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D + + A G+ P+++Q E IP A+ G DI+ A++G GKT F L L
Sbjct: 15 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 74
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L + ++ LV+ TRELAFQIS+++E + GV+ +V GG+ L P
Sbjct: 75 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-P 132
Query: 607 HIVVGTPGRIL-ALVNSKKLNFETFK 681
HI++ TPGR++ L N+K N K
Sbjct: 133 HIIIATPGRLIDHLENTKGFNLRALK 158
>UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX47;
n=32; Eukaryota|Rep: Probable ATP-dependent RNA helicase
DDX47 - Homo sapiens (Human)
Length = 455
Score = 91.1 bits (216), Expect = 2e-17
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D + + A G+ P+++Q E IP A+ G DI+ A++G GKT F L L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L + ++ LV+ TRELAFQIS+++E + GV+ +V GG+ L P
Sbjct: 86 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-P 143
Query: 607 HIVVGTPGRIL-ALVNSKKLNFETFK 681
HI++ TPGR++ L N+K N K
Sbjct: 144 HIIIATPGRLIDHLENTKGFNLRALK 169
>UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA
helicase - Bacillus halodurans
Length = 389
Score = 90.6 bits (215), Expect = 3e-17
Identities = 47/139 (33%), Positives = 78/139 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ + + L A+ + G P+E+Q + IP+A+ G +++ +++G GKT ++L L +
Sbjct: 4 FQQWPIGEPFLEALTNQGITEPTEIQQQVIPEALDGQNLIVHSQTGTGKTLAYLLPMLTK 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
E L++ T+ELA QI + ++ + S + V GG I++ E LK P
Sbjct: 64 TEELPEQTQALILAPTQELAMQIVEVAKQLTATTS-ITVLPLIGGANIKRQVEKLKKKKP 122
Query: 607 HIVVGTPGRILALVNSKKL 663
H+ VGTPGRIL L+ KKL
Sbjct: 123 HVAVGTPGRILELMEMKKL 141
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 90.6 bits (215), Expect = 3e-17
Identities = 51/131 (38%), Positives = 74/131 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L EI++A+ + P+ +Q + IP A+ G DI+ ++K+G GKTA F + +
Sbjct: 6 FTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICES 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ E+ LV+ TRELA+Q+ E + M V+V V FGG P K LK
Sbjct: 66 IVWEENLPQALVLEPTRELAYQVKDEIFNVGR-MKRVKVPVVFGGFPFDKQALTLKQK-S 123
Query: 607 HIVVGTPGRIL 639
HIVVGTPGR+L
Sbjct: 124 HIVVGTPGRVL 134
>UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13;
Proteobacteria|Rep: DEAD/DEAH box helicase-like -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 422
Score = 90.6 bits (215), Expect = 3e-17
Identities = 59/147 (40%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
S GF LL P LRAI D G+ P+ +Q + IP +LG D++ A++G GKTA F L
Sbjct: 5 SLGFSPALL-PAFLRAIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFALPM 63
Query: 418 LQQLEPSES----HVYVLVMCHTRELAFQISKEYERFSKYM-SGVRVSVFFGGMPIQKDE 582
LQQL + + L++ TRELA Q+ + F+KY+ V+V+V FGG+ I
Sbjct: 64 LQQLANAPTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSINPQM 123
Query: 583 EVLKTACPHIVVGTPGRILALVNSKKL 663
L+ IVV TPGR+L L+ L
Sbjct: 124 MNLRGGA-DIVVATPGRLLDLLEHNAL 149
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 90.6 bits (215), Expect = 3e-17
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
S F L IL+AI D G+ PS +Q + IP + G D++ A++G GKTA F L
Sbjct: 4 SMSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPL 63
Query: 418 LQQLEPSE----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
L+ L E + V LV+ TRELA Q+++ + + +++S ++ +V FGG+ I
Sbjct: 64 LEILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLS-LKSTVVFGGVKINPQMM 122
Query: 586 VLKTACPHIVVGTPGRILALVNSKKLNFE 672
L+ I++ TPGR++ L N K + F+
Sbjct: 123 ALRRGA-DILIATPGRMMDLYNQKAVRFD 150
>UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacillus cereus group|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 389
Score = 90.2 bits (214), Expect = 4e-17
Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
++P + +A GF+ +E+Q + IP + G D++ ++ +G GKT ++L L ++ P
Sbjct: 5 MQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIV 615
V+V+ TREL QI +E ++F+ +G +S GG I++ E LK P ++
Sbjct: 65 KQPQVVVLAPTRELVMQIHEEVQKFT---AGTEISGASLIGGADIKRQVEKLKKH-PRVI 120
Query: 616 VGTPGRILALVNSKKLNFETFK 681
VG+PGRIL L+ KKL K
Sbjct: 121 VGSPGRILELIRMKKLKMHEVK 142
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 90.2 bits (214), Expect = 4e-17
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L I +A+ + G++ PS +Q + IP + G D++ A++G GKTA F L L+
Sbjct: 3 FSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 427 LEPSES----HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L + LV+ TRELA Q+S+ E + KY+ +R +V FGG+PI + L+
Sbjct: 63 LSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQKLR 121
Query: 595 TACPHIVVGTPGRILALVNSKKLNF 669
++V TPGR+L L K + F
Sbjct: 122 HGV-DVLVATPGRLLDLEQQKAVKF 145
>UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2;
Bacillaceae|Rep: ATP-dependent RNA helicase -
Oceanobacillus iheyensis
Length = 432
Score = 89.8 bits (213), Expect = 6e-17
Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L P + I F++P+E+Q + IP + G ++ Q+++G GKT F+L
Sbjct: 3 FEDLQLNPIVNDVIEQLKFKNPTEIQEKVIPAIIKGDSVVGQSRTGSGKTHAFLLPLFHG 62
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVR---VSVFFGGMPIQKDEEVLKT 597
LE + V ++ TRELA Q+ E + + GG QK E LKT
Sbjct: 63 LESDKKEVQFVITAPTRELATQLYGEVRNIITLADKTKEWNAKLLVGGTDKQKMTEKLKT 122
Query: 598 ACPHIVVGTPGRILALVNSKKLNFETFKN 684
PHI+VGTPGRIL LV S L+ T K+
Sbjct: 123 P-PHIIVGTPGRILDLVKSGALSIYTAKS 150
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 89.8 bits (213), Expect = 6e-17
Identities = 47/133 (35%), Positives = 77/133 (57%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F D+ L E+L++I FE P++VQ + IP + DI+ ++++G GKTA F +
Sbjct: 4 SNFSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPIC 63
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
Q ++ E+ LV+ TRELA Q+ ++ ++ ++V+ +G P E+ LK
Sbjct: 64 QLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRF-KRLKVAAVYGKAPFYHQEKELKQK 122
Query: 601 CPHIVVGTPGRIL 639
H+VVGTPGRI+
Sbjct: 123 -THVVVGTPGRII 134
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 89.8 bits (213), Expect = 6e-17
Identities = 46/140 (32%), Positives = 79/140 (56%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F F L+ ++ A+ D FE P+E+Q+ IP+ + +++ Q+++G GK+ F+L +Q
Sbjct: 6 FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ +V+ TRELA Q+ S++ +GV V VF GG I+KD + A P
Sbjct: 66 IDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRC-NAQP 124
Query: 607 HIVVGTPGRILALVNSKKLN 666
+++GTP RI L + L+
Sbjct: 125 QLIIGTPTRINDLAKTGHLH 144
>UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=4;
Neisseria|Rep: Putative ATP-dependent RNA helicase -
Neisseria meningitidis serogroup C / serotype 2a (strain
ATCC 700532 /FAM18)
Length = 483
Score = 89.8 bits (213), Expect = 6e-17
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Frame = +1
Query: 229 SIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFV 408
+I S+ F L E++ A+ G+E+P+ +Q IP+A+ G D+L A++G GKTA F+
Sbjct: 25 TIMSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFM 84
Query: 409 LATLQQLE--------PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 564
L +L++L+ P+ V +LV+ TRELA QI + + + K + +R +V FGGM
Sbjct: 85 LPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGM 143
Query: 565 PIQKDEEVLKTACPHIVVGTPGRILALVNSKKLN 666
+ K L+ C IVV T GR+L V K ++
Sbjct: 144 NMDKQTADLRAGC-EIVVATVGRLLDHVKQKNIS 176
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 89.8 bits (213), Expect = 6e-17
Identities = 42/137 (30%), Positives = 75/137 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L +L + F P+++Q IP A+ MD++ Q+KSG GKT ++V+A +Q
Sbjct: 27 FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQS 86
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
P+ + + +++ TRELA Q+ + K + S F GG + KD + + +
Sbjct: 87 FNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNES-- 144
Query: 607 HIVVGTPGRILALVNSK 657
+++GTPGR+L L ++
Sbjct: 145 RVIIGTPGRLLHLYENR 161
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 89.8 bits (213), Expect = 6e-17
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L P+ILRA+ + G+ P+ +Q + IP + G D++ A++G GKTA F L LQ L +
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67
Query: 442 SH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
H V L++ TRELA QI + +SKY++ +R V FGG+ I L+
Sbjct: 68 PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGV 126
Query: 604 PHIVVGTPGRILALVNSKKLNFE 672
++V TPGR+L L + + +
Sbjct: 127 -DVLVATPGRLLDLEHQNAVKLD 148
>UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helicase
protein; n=1; Methylophilales bacterium HTCC2181|Rep:
putative ATP-dependent RNA helicase protein -
Methylophilales bacterium HTCC2181
Length = 427
Score = 89.4 bits (212), Expect = 7e-17
Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ F L IL+AI + G++ P+ +Q + IP+ +L +L A++G GKTA FVL L +
Sbjct: 3 FQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILDK 62
Query: 427 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L + S VL++ TRELA QI+ +++S+Y+ + GG+ +
Sbjct: 63 LTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLR-INSITITGGISYGLQNRMFSK 121
Query: 598 ACPHIVVGTPGRILALVNSKKLNFE 672
I+V TPGR+L L KK+NF+
Sbjct: 122 PI-DILVATPGRLLDLYQQKKINFK 145
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 89.4 bits (212), Expect = 7e-17
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L I +A+ + G++ PS +Q + IP + G D++ A++G GKTA F L L+
Sbjct: 3 FSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 427 LEPSES----HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L + LV+ TRELA Q+S+ E + KY+ +R +V FGG+PI + L+
Sbjct: 63 LSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQKLR 121
Query: 595 TACPHIVVGTPGRILALVNSKKLNF 669
++V TPGR+L LV + F
Sbjct: 122 HGV-DVLVATPGRLLDLVQQNVVKF 145
>UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinomonas sp. MWYL1|Rep: DEAD/DEAH box helicase
domain protein - Marinomonas sp. MWYL1
Length = 452
Score = 89.4 bits (212), Expect = 7e-17
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L ++++I + GFE+ SE+Q E +P +LG DI+ QA++G GKTA F++A +
Sbjct: 73 FHDLNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQTGTGKTAAFLIAMISD 132
Query: 427 -----LEPSESHVYV--LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
LE ++ + L++ TRELA QI+ E + + + V GG+ +K +
Sbjct: 133 FLDYPLEEKRANNFARGLIIAPTRELAIQIADEAVKLTSNCH-LNVVTLVGGLSYEKQKI 191
Query: 586 VLKTACPHIVVGTPGRILALVNSKKL 663
L+T I+V TPGR+L S+K+
Sbjct: 192 ALETENVDILVATPGRLLDFARSRKV 217
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 89.4 bits (212), Expect = 7e-17
Identities = 50/144 (34%), Positives = 75/144 (52%)
Frame = +1
Query: 208 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 387
E+ G V+ + D L E+++AI G+ + VQ IP + D++ +A +G
Sbjct: 2 EINGEQVN-EVVNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGT 60
Query: 388 GKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMP 567
GKT F + ++ ++P V LV+ TRELA QI E ++ GVR +GG P
Sbjct: 61 GKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAP 120
Query: 568 IQKDEEVLKTACPHIVVGTPGRIL 639
I+K LK P IVV TPGR++
Sbjct: 121 IEKQITTLKKH-PQIVVATPGRLM 143
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 89.4 bits (212), Expect = 7e-17
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D + E+ RA + G++ P+++Q E IP A+ G DI+ A++G GKTA F + LQ+
Sbjct: 43 FEDLGVCVELCRACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQK 102
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L ++ L++ TREL+ QI ++ + G+ V + GG+ + L P
Sbjct: 103 LLEKPQRLFSLILAPTRELSLQIKEQLISLGSEI-GLDVCLILGGLDMVSQALQLSKK-P 160
Query: 607 HIVVGTPGRIL-ALVNSKKLNFETFK 681
HI+VG+PGRI L N+K + ET K
Sbjct: 161 HIIVGSPGRIADHLQNTKGFSLETIK 186
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 89.0 bits (211), Expect = 1e-16
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Frame = +1
Query: 187 TEVAPKKEVKGSYVSIH---SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM 357
+E +P +K S H + GF F LK +L+ I + GF PS VQ + IP + G
Sbjct: 24 SEESPSVTIKQGLKSKHKQDTQGFDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIILQGK 83
Query: 358 DILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGV 537
D++ QA++G GKTA F + L L ++ + L++ TRELA QIS+E + ++ +
Sbjct: 84 DLIAQAQTGTGKTAAFAIPILNTLNRNKD-IEALIITPTRELAMQISEEILKLGRF-GRI 141
Query: 538 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 639
+ +GG I++ ++L+ P ++ TPGR+L
Sbjct: 142 KTICMYGGQSIKRQCDLLEKK-PKAMIATPGRLL 174
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 89.0 bits (211), Expect = 1e-16
Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L I+RAI + G+EHP+ +Q + IP+ + G D+L A++G GKTA F L LQ+
Sbjct: 293 FADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQK 352
Query: 427 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L S + + L++ TRELA Q+++ ++ + KY+ + ++ GG + + +VL
Sbjct: 353 LAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLR-LTHALLIGGESMAEQRDVLNR 411
Query: 598 ACPHIVVGTPGRILAL 645
+++ TPGR+L L
Sbjct: 412 GV-DVLIATPGRLLDL 426
>UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep:
RNA helicase - Guillardia theta (Cryptomonas phi)
Length = 381
Score = 89.0 bits (211), Expect = 1e-16
Identities = 49/152 (32%), Positives = 84/152 (55%)
Frame = +1
Query: 211 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 390
+K + + F+D LK ++L + D G+EHPS +Q + IP A+ DIL ++K+G G
Sbjct: 5 IKNNLYENENLKFKDLKLKNDLLLGLNDLGYEHPSLIQEKIIPLAINNKDILARSKNGTG 64
Query: 391 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 570
KT F++ LQ + + +++ TRELA QIS + SKYM + + V G+
Sbjct: 65 KTLSFLIPILQNIYSESYGIESIILVPTRELALQISSLLRKLSKYMKNINLQV--TGVDS 122
Query: 571 QKDEEVLKTACPHIVVGTPGRILALVNSKKLN 666
+ D+ + +I++GTPG+I + ++N
Sbjct: 123 KIDKNNIDF---NILLGTPGKIYDCLCKNEVN 151
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 88.2 bits (209), Expect = 2e-16
Identities = 43/128 (33%), Positives = 73/128 (57%)
Frame = +1
Query: 298 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTR 477
GF+ P+ VQ + + G D++ ++ +G GKT + L L++++P + H +++ +R
Sbjct: 23 GFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSR 82
Query: 478 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSK 657
EL QI + + + K S +R + GG ++K E LK PHI+VGTPGR+ L+ +K
Sbjct: 83 ELVMQIFQVIQDW-KAGSELRAASLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAK 140
Query: 658 KLNFETFK 681
KL K
Sbjct: 141 KLKMHEVK 148
>UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 577
Score = 88.2 bits (209), Expect = 2e-16
Identities = 45/126 (35%), Positives = 72/126 (57%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L P + A + G++ VQ +P G D++ Q+++G GKT F+L L++L+P+E
Sbjct: 44 LAPRLQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLLERLDPAE 103
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
+ LV+ TRELA Q+ E + +G+RV+ +GG+ K + L+ H VVG
Sbjct: 104 ASTQALVLVPTRELALQVEHEARTLFE-GTGLRVAAVYGGVGYGKQNDALREGA-HFVVG 161
Query: 622 TPGRIL 639
TPGR+L
Sbjct: 162 TPGRVL 167
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 87.8 bits (208), Expect = 2e-16
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L PE+++A + + P+ +Q + IP A+ G DI+ A++G GKTA F + L +
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L + Y ++ TRELA QI + ++ M GVR + GGM + L P
Sbjct: 143 LWHDQEPYYACILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMNMMDQARDLMRK-P 200
Query: 607 HIVVGTPGRIL-ALVNSKKLNFETFK 681
HI++ TPGR++ L N+K + K
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLK 226
>UniRef50_Q9FNM7 Cluster: DEAD-box ATP-dependent RNA helicase 26;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 26 - Arabidopsis thaliana (Mouse-ear cress)
Length = 850
Score = 87.8 bits (208), Expect = 2e-16
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Frame = +1
Query: 187 TEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL 366
T+ + VK S + + F F L P L+AI D GFE + VQ +P + G D+L
Sbjct: 364 TDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVL 423
Query: 367 CQAKSGMGKTAVFVLATLQQL--EPSESH------VYVLVMCHTRELAFQISKEYERFSK 522
+AK+G GKT F+L ++ + P S + VLV+C TRELA Q + E K
Sbjct: 424 AKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLK 483
Query: 523 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 636
Y + V V GG + ++ ++T I+V TPGR+
Sbjct: 484 YHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRL 521
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 87.8 bits (208), Expect = 2e-16
Identities = 49/138 (35%), Positives = 81/138 (58%)
Frame = +1
Query: 244 GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ 423
G+ L P +L+ I D G++ PS VQ IP + G ++L ++K+G GKTA +++ L
Sbjct: 109 GWESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLN 168
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
+ SE + +++ RELA QIS+ +R S+ +GV + GG +Q D+ + +
Sbjct: 169 MINSSELSIQGIILVPIRELALQISRNVKRMSE-GTGVISAPVVGGTSMQ-DDIIRVSNG 226
Query: 604 PHIVVGTPGRILALVNSK 657
H++VGTPGRI+ LV +
Sbjct: 227 VHVMVGTPGRIVDLVEKR 244
>UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=20; Bacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 436
Score = 87.4 bits (207), Expect = 3e-16
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + KP ++ A+ + F P+ +Q + P G+ ++ Q+++G GKT ++L TL +
Sbjct: 6 FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG---VRVSVFFGGMPIQKDEEVLKT 597
+ P V +++ TRELA QI +E + +K+ + + GG Q+ E LK
Sbjct: 66 INPGREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKK 125
Query: 598 ACPHIVVGTPGRILALVNSKKL 663
PHIVVGTPGRI LV + L
Sbjct: 126 Q-PHIVVGTPGRIKDLVEEQAL 146
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 87.4 bits (207), Expect = 3e-16
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D + IL A+ G+ HP+ +Q E IP A+ G D+L A++G GKTA FV+ L +
Sbjct: 46 FTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVLDR 105
Query: 427 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L + S L++ TRELA Q+ +SK M G+ GG P LK
Sbjct: 106 LSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK 165
Query: 598 ACPHIVVGTPGRILALVNSKKLNFETFK 681
++V TPGR+L +N+ +++ + +
Sbjct: 166 GV-QVIVATPGRLLDHINAGRVDLSSLE 192
>UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 763
Score = 87.4 bits (207), Expect = 3e-16
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L +IL+A G+ P+ +Q CIP A+ G DI A +G GKTA FVL L++
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 427 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
+ S VLV+ TRELA Q+ + + + S ++ + V + GG+ ++ E L++
Sbjct: 210 MIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQ-LEVCLCAGGLDLKAQEAALRS 268
Query: 598 ACPHIVVGTPGRIL-ALVNSKKLNFETFK 681
P +VV TPGR++ L NS N +
Sbjct: 269 G-PDVVVATPGRLIDHLHNSPSFNLSNIE 296
>UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 643
Score = 87.4 bits (207), Expect = 3e-16
Identities = 48/144 (33%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Frame = +1
Query: 259 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--E 432
L+KP +L+A+ + +E P+ +Q IP A+ G D+L + +G GKTA F++ LQ+
Sbjct: 197 LIKP-LLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQKFYRS 255
Query: 433 PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 612
P ++ L++ TRELAFQI + + + +KY + +R + G +QK E L+ P +
Sbjct: 256 PFTNYSKALIVTPTRELAFQIYEVFTKLNKY-TKLRACLVIGQSAMQKQEAELR-GNPEV 313
Query: 613 VVGTPGRIL-ALVNSKKLNFETFK 681
++ TPGR++ L NS+ ++ + +
Sbjct: 314 IIATPGRLIDHLQNSRSIDLDNLE 337
>UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX27;
n=34; Bilateria|Rep: Probable ATP-dependent RNA helicase
DDX27 - Homo sapiens (Human)
Length = 796
Score = 87.4 bits (207), Expect = 3e-16
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D L +L+AI GF+ P+ +Q CIP +LG DI A +G GKTA F L L++
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 427 L--EPSESHV-YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L +P ++ V VLV+ TREL Q+ + +++ + + + GG+ ++ E L+
Sbjct: 280 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCN-ITTCLAVGGLDVKSQEAALR- 337
Query: 598 ACPHIVVGTPGRIL 639
A P I++ TPGR++
Sbjct: 338 AAPDILIATPGRLI 351
>UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar to
R27090_2 - Ornithorhynchus anatinus
Length = 332
Score = 87.0 bits (206), Expect = 4e-16
Identities = 47/132 (35%), Positives = 72/132 (54%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+GF L P ++ G P+ VQ C+P + G D + AK+G GKTA FVL L
Sbjct: 2 AGFGALGLAPWLVEQCQQLGLRQPTPVQQSCVPAILEGRDCMGCAKTGSGKTAAFVLPIL 61
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
Q+L ++ LV+ TRELA+QI++++ K + G++ + GGM + L
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIVVGGMDMVTQALDLSRK 120
Query: 601 CPHIVVGTPGRI 636
PH+V+ TPGR+
Sbjct: 121 -PHVVIATPGRL 131
>UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducible
ATP-independent RNA helicase; n=2;
Enterobacteriaceae|Rep: Cold-shock DEAD-box protein A,
inducible ATP-independent RNA helicase - Blochmannia
floridanus
Length = 487
Score = 87.0 bits (206), Expect = 4e-16
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+ F D L I+ + + G++ P +Q +CIP + G D+L A +G GKTA F+L L
Sbjct: 6 NSFVDLGLNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLL 65
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG-VRVSVFFGGMPIQKDEEVLKT 597
Q ++ + V L++ TRELA QI F K +S + ++V +GG + LK
Sbjct: 66 QNIDIKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLKK 125
Query: 598 ACPHIVVGTPGRIL 639
PHI++GTPGR+L
Sbjct: 126 N-PHIIIGTPGRLL 138
>UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;
n=6; Oryza sativa|Rep: DEAD-box ATP-dependent RNA
helicase 48 - Oryza sativa subsp. japonica (Rice)
Length = 811
Score = 87.0 bits (206), Expect = 4e-16
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + + P ++A+ D G+ + VQ +P + G D+L +AK+G GK+A F+L ++
Sbjct: 344 FEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIES 403
Query: 427 -LEPSESH-------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
L +SH ++ L++C TRELA Q++ E KY G+ V GG + D+
Sbjct: 404 VLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQ 463
Query: 583 EVLKTACPHIVVGTPGRILALVNSK 657
L++ I+V TPGR+L + +K
Sbjct: 464 RRLESDPCQILVATPGRLLDHIENK 488
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 86.6 bits (205), Expect = 5e-16
Identities = 40/145 (27%), Positives = 78/145 (53%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + + +A+ + F + +Q IP+ + G D++ QA++G GKT F + +++
Sbjct: 5 FEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPIIEK 64
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+EP L++C TREL Q+ +E ++ ++ +R++V +GG K L+ A P
Sbjct: 65 IEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALE-AKP 123
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
H+++ TPGR + + K++ K
Sbjct: 124 HLIIATPGRAIDHLERGKIDLSALK 148
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 86.6 bits (205), Expect = 5e-16
Identities = 47/142 (33%), Positives = 78/142 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F++ L ++L A+ F +E+Q IP + G +I ++ +G GKTA FVL L++
Sbjct: 3 FKELQLSDKVLVALEKANFNEATEIQARAIPLFLEGKNIFGKSSTGTGKTASFVLPILEK 62
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+EP++ V ++M TRELA QI + F + + ++ GG ++ + LK +
Sbjct: 63 IEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRLKDS-- 120
Query: 607 HIVVGTPGRILALVNSKKLNFE 672
IVVGTPGR+ +N K L +
Sbjct: 121 QIVVGTPGRVNDHLNRKTLKLD 142
>UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase;
n=1; Desulfotalea psychrophila|Rep: Related to
ATP-dependent RNA helicase - Desulfotalea psychrophila
Length = 498
Score = 86.6 bits (205), Expect = 5e-16
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF + ++ I D FE+ + +Q + + + G D++ +A +G GKTAVF++ + +
Sbjct: 96 FHDFAIPLPLMHGIADLKFEYCTPIQEQSLEAVLAGKDLIGKANTGTGKTAVFLVGVMAR 155
Query: 427 LEPSES------HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
L + L++ TREL QI K+ ++ +Y +GV +GG +K E+
Sbjct: 156 LLADKKGGLGKRTPRALILAPTRELVMQIVKDAKKLGRY-TGVNADAVYGGAEYEKQMEL 214
Query: 589 LKTACPHIVVGTPGRILALVNSKKLNFE 672
LK IVV TPGR++ N + +NF+
Sbjct: 215 LKRGKTDIVVATPGRLIDFHNKRLVNFD 242
>UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3;
Sphingomonadales|Rep: DNA and RNA helicase - Zymomonas
mobilis
Length = 492
Score = 86.6 bits (205), Expect = 5e-16
Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L E+L+A+ + G+E P+ VQ IP ++ D++ A++G GKTA FVL +
Sbjct: 3 FADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDI 62
Query: 427 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L + L++ TRELA Q+++ +E++ KY + +S+ GG+P+ + + L+
Sbjct: 63 LAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHK-LSMSLLIGGVPMAEQQAALEK 121
Query: 598 ACPHIVVGTPGRILALVNSKKL 663
+++ TPGR+L L K+
Sbjct: 122 GV-DVLIATPGRLLDLFERGKI 142
>UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=18;
Alphaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Jannaschia sp. (strain CCS1)
Length = 644
Score = 86.6 bits (205), Expect = 5e-16
Identities = 44/134 (32%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L P++ +AIV+ G+E P+ +Q IP A+ G D+L A++G GKTA F L +
Sbjct: 13 FADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITM 72
Query: 427 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L + + LV+C TRELA Q+++ ++ ++K++ + ++ GG+ ++ E+ +
Sbjct: 73 LARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVK-LTKALLIGGVSFKEQEQAIDK 131
Query: 598 ACPHIVVGTPGRIL 639
+++ TPGR+L
Sbjct: 132 GV-DVLIATPGRLL 144
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 86.6 bits (205), Expect = 5e-16
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 5/151 (3%)
Frame = +1
Query: 220 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 399
+++S+H S F L P IL+A+ + P +Q + IP + G DIL A++G GKTA
Sbjct: 3 THLSLHMS-FATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTA 61
Query: 400 VFVLATLQQLEP----SESHVYVLVMCHTRELAFQISKEYERFSKYM-SGVRVSVFFGGM 564
FVL LQ L+ H+ LV+ TRELA Q+ + ++ FS + + ++ +GG+
Sbjct: 62 SFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGV 121
Query: 565 PIQKDEEVLKTACPHIVVGTPGRILALVNSK 657
I + ++++ I++ TPGR+L LV+SK
Sbjct: 122 SI--NPQMIQLQGVEILIATPGRLLDLVDSK 150
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 86.6 bits (205), Expect = 5e-16
Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L +I+ ++ G+E+P+ +Q IP + G D+L QA++G GKTA F L +
Sbjct: 9 FSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINN 68
Query: 427 LE--PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
++ + VLV+ TRELA Q+++++E F+K + + V+ +GG LK
Sbjct: 69 MDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQG 128
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFK 681
+VVGT GR++ + L + +
Sbjct: 129 V-KVVVGTTGRVMDHIEKGTLQLDNLR 154
>UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Type III restriction enzyme, res subunit family protein
- Tetrahymena thermophila SB210
Length = 440
Score = 86.6 bits (205), Expect = 5e-16
Identities = 46/134 (34%), Positives = 74/134 (55%)
Frame = +1
Query: 298 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTR 477
G+++P+++Q IP + ++ A++G GKTA F LQ L V+ +V+ R
Sbjct: 21 GYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQDLAKDPFGVFAIVLTANR 80
Query: 478 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSK 657
ELA QIS+++ F ++ +RVS GG+ K L+ PHIVVGTPGR L +++
Sbjct: 81 ELAMQISEQFTIFGSSLN-LRVSTLVGGVDFNKQLSELE-RIPHIVVGTPGRTLDMIDKS 138
Query: 658 KLNFETFKNTSSLM 699
+ E +N L+
Sbjct: 139 PVLKEYIENVKYLV 152
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 86.6 bits (205), Expect = 5e-16
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIP--QAVLGMDILCQAKSGMGKTAVFVLATLQQLEP 435
L P +L+ + GF PSE+Q I + ++ QA+SG GKT F + L +++
Sbjct: 98 LPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRHVIAQAQSGTGKTGAFSIGVLSKIDV 157
Query: 436 SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIV 615
S+ LV+ TRELA QI ++ + G+ +++F GG D + + PHI
Sbjct: 158 SQKTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQRVVDAQARAASHPHIC 217
Query: 616 VGTPGRILALVNSKKLNFETFK 681
+ TPGR L L+ S L + FK
Sbjct: 218 ICTPGRALDLIVSGHLRVQNFK 239
>UniRef50_A3H9E9 Cluster: DEAD/DEAH box helicase-like; n=1;
Caldivirga maquilingensis IC-167|Rep: DEAD/DEAH box
helicase-like - Caldivirga maquilingensis IC-167
Length = 359
Score = 86.6 bits (205), Expect = 5e-16
Identities = 50/141 (35%), Positives = 79/141 (56%)
Frame = +1
Query: 259 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS 438
LLK E+ RAI + GF P+EVQ IP+ + G ++ QA++G GKTA ++L T+ ++
Sbjct: 5 LLKEELRRAISEYGFNEPTEVQRSVIPKILDGFNVAMQARTGSGKTAAYLLPTMSMMKGD 64
Query: 439 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 618
LV+ TRELA QI ++ F+KY + +V +GG+ + L+ A ++V
Sbjct: 65 LGE--ALVISPTRELALQIMNQFLIFNKY-TKFNSAVVYGGVGYSGQVKALRDA--SLIV 119
Query: 619 GTPGRILALVNSKKLNFETFK 681
TPGR+L L ++ K
Sbjct: 120 ATPGRLLDLTGKSIVDLSNVK 140
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 86.2 bits (204), Expect = 7e-16
Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQ 423
F DF L EIL AI G+E P+E+Q +P A+ D++ QA++G GKTA F + L+
Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79
Query: 424 QLE-PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
+++ + V +++ TRELA QI +E + K V+++ +GG ++K + L+
Sbjct: 80 RIDFKANKFVKAIIVTPTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEKG 138
Query: 601 CPHIVVGTPGRILALVNSKKLN 666
IVVGTPGRI+ +N L+
Sbjct: 139 V-DIVVGTPGRIIDHLNRDTLD 159
>UniRef50_A6GSW1 Cluster: Putative ATP-dependent RNA helicase; n=1;
Limnobacter sp. MED105|Rep: Putative ATP-dependent RNA
helicase - Limnobacter sp. MED105
Length = 617
Score = 86.2 bits (204), Expect = 7e-16
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L +L+A+ P+ VQ E +P G D++ +++G GKT F+L + +
Sbjct: 3 FDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVMHR 62
Query: 427 LEPSESHVY-------VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
+ E LV+C TRELA Q+S++ K+ GVRV+ GGMP K
Sbjct: 63 MMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKGVRVATVVGGMPYGKQMA 122
Query: 586 VLKTACPHIVVGTPGRILALVNSKKLNFET 675
L+ A IVVGTPGR+L L KLN T
Sbjct: 123 SLRGA--RIVVGTPGRLLDLAQQGKLNLST 150
>UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinekea
sp. MED297|Rep: ATP-dependent RNA helicase - Reinekea
sp. MED297
Length = 534
Score = 86.2 bits (204), Expect = 7e-16
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L ++RAI + G+E+ S +Q +P A+ G D + +A++G GKTA F++ +
Sbjct: 29 FHDLFLPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITD 88
Query: 427 -LEPSESHVYV-----LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
LE YV L++ TRELA QI+++ + +KY S ++V+ GGM K ++
Sbjct: 89 LLEHRLEEQYVGEPRALILAPTRELALQIAEDAKALTKY-SRLKVAAVVGGMDFDKQKQQ 147
Query: 589 LKTACPHIVVGTPGRILALVNSK 657
L I+V TPGR++ +N K
Sbjct: 148 LHEQRTDILVATPGRLIDFMNRK 170
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 86.2 bits (204), Expect = 7e-16
Identities = 46/145 (31%), Positives = 79/145 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + + IL+AI D GF+ P+EVQ + IP + D++ +K+G GKTAVF ++ LQ
Sbjct: 5 FNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQL 64
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
P E+ L++ RELA Q+ + + +KY+ + + +G I + ++L
Sbjct: 65 TNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILNKGV- 122
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
IV GTPGR+ ++ L+ + +
Sbjct: 123 SIVTGTPGRVFDHISHGTLSTKNIR 147
>UniRef50_A0EIJ0 Cluster: Chromosome undetermined scaffold_99, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_99,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 706
Score = 86.2 bits (204), Expect = 7e-16
Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
S GF L PE+ RAI GF P+ +Q + IPQ + G DI+ +K+G GKTA F++
Sbjct: 9 SGGFESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAFLIPL 68
Query: 418 LQQLEPSESHVYV--LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
+ +L+ + V + L++ TRELA QI+ + K+ S ++ S+ GG + E L
Sbjct: 69 INKLQNHSTVVGIRGLILLPTRELALQIASVLKALLKF-SDIQYSIMVGGHGFEGQFESL 127
Query: 592 KTACPHIVVGTPGRIL 639
+ P I++ TPGR+L
Sbjct: 128 -ASNPDILICTPGRVL 142
>UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase drs1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 754
Score = 86.2 bits (204), Expect = 7e-16
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Frame = +1
Query: 214 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 393
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 394 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 564
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 565 PIQKDEEVLKTACPHIVVGTPGRIL 639
++ E+ L+ P IV+ TPGR +
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFI 392
>UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX49;
n=34; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX49 - Homo sapiens (Human)
Length = 483
Score = 86.2 bits (204), Expect = 7e-16
Identities = 48/132 (36%), Positives = 73/132 (55%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+GF + L ++ G + P+ VQ CIP + G D L AK+G GKTA FVL L
Sbjct: 2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
Q+L ++ LV+ TRELA+QI++++ K + G++ + GGM + L
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDMVAQALELSRK 120
Query: 601 CPHIVVGTPGRI 636
PH+V+ TPGR+
Sbjct: 121 -PHVVIATPGRL 131
>UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_03001730;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001730 - Ferroplasma acidarmanus fer1
Length = 430
Score = 85.8 bits (203), Expect = 9e-16
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Frame = +1
Query: 301 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE-SHVYVLVMCHTR 477
F P+E+Q + IP + G D++ ++K+G GKTA ++L L +E + V +++ TR
Sbjct: 16 FTEPTEIQEKAIPVVLTGKDVIIRSKTGSGKTAAYLLPVLNSVEKLKGKSVKAIIILPTR 75
Query: 478 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSK 657
ELA Q + R K +SG++ ++ +GG I + E L + IV+GTPGRIL L N K
Sbjct: 76 ELALQTHRVASRLGK-ISGIKSTIVYGGASIIRQVEELPGS--DIVIGTPGRILDLYNQK 132
Query: 658 KLNFETFK 681
L + K
Sbjct: 133 YLKLDHVK 140
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 85.8 bits (203), Expect = 9e-16
Identities = 44/114 (38%), Positives = 64/114 (56%)
Frame = +1
Query: 298 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTR 477
G + +Q + IP + G DI+ QAK+G GKT FVL L++++P S V L++ TR
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTR 83
Query: 478 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 639
ELA QI+ E ++ + V +GG + + LK HIVV TPGR+L
Sbjct: 84 ELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK-GNTHIVVATPGRLL 136
>UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular
organisms|Rep: DEAD/DEAH box helicase - Thiobacillus
denitrificans (strain ATCC 25259)
Length = 533
Score = 85.8 bits (203), Expect = 9e-16
Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L P IL++++ G+E+ + VQ + IP A+ G D+L + +G GKTA F+L ++Q+
Sbjct: 3 FSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQR 62
Query: 427 L--EPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L EP+ + VLV+ TRELA Q+ K + K M R + GG P + L
Sbjct: 63 LLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRLS 122
Query: 595 TACPHIVVGTPGRILALVNSKKLNF 669
+VV TPGR++ + K++F
Sbjct: 123 QPV-DVVVATPGRLIDHLERGKIDF 146
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 85.8 bits (203), Expect = 9e-16
Identities = 46/136 (33%), Positives = 74/136 (54%)
Frame = +1
Query: 232 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 411
+ S F + L IL + G+E PS +Q + IP + G D+L QA++G GKTA F L
Sbjct: 6 VASPTFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFAL 65
Query: 412 ATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L +L+ VLV+ TRELA Q++ + ++ + + G+ V GG ++ L
Sbjct: 66 PLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGL 125
Query: 592 KTACPHIVVGTPGRIL 639
+ ++VGTPGR++
Sbjct: 126 RRGA-QVIVGTPGRVI 140
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 85.8 bits (203), Expect = 9e-16
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + + E+ + I + GF + +Q + +P A+ G D+ QA++G GKTA F+++ +
Sbjct: 3 FTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIFTK 62
Query: 427 L-----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L E H L++ TREL QI K+ + KY +G + +GG+ K + L
Sbjct: 63 LLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKY-TGFNIQAIYGGVDYMKQRDAL 121
Query: 592 KTACPHIVVGTPGRILALVNSK 657
K A IV+GTPGR++ + K
Sbjct: 122 K-AGADIVIGTPGRLIDYLKQK 142
>UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog;
n=39; Gammaproteobacteria|Rep: ATP-dependent RNA
helicase srmB homolog - Haemophilus influenzae
Length = 439
Score = 85.8 bits (203), Expect = 9e-16
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F F L PE+L+A+ G+ P+ +Q E IP A+ D+L A +G GKTA F+L L
Sbjct: 4 SQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPAL 63
Query: 421 QQL----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
Q L +LV+ TRELA Q++++ E +++ + + ++ GG+ Q +V
Sbjct: 64 QHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQF-THLNIATITGGVAYQNHGDV 122
Query: 589 LKTACPHIVVGTPGRILALVNSKKLNFE 672
T +VV TPGR+L + K+ NF+
Sbjct: 123 FNTN-QDLVVATPGRLLQYI--KEENFD 147
>UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Pseudomonas putida (strain KT2440)
Length = 398
Score = 85.8 bits (203), Expect = 9e-16
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF L E++ AI D GF + + +Q + + + G D + +A++G GKTA F+++ + Q
Sbjct: 11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 70
Query: 427 LE----PSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
L+ P E ++ L++ TREL QI+K+ +KY +G+ V F GGM K +
Sbjct: 71 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY-TGLNVMSFVGGMDFDKQLK 129
Query: 586 VLKTACPHIVVGTPGRIL 639
L+ I+V TPGR+L
Sbjct: 130 ALEARHCDILVATPGRLL 147
>UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 432
Score = 85.4 bits (202), Expect = 1e-15
Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D L PE+L+ + G++ P+ +Q IP A+ DI+ A++G GKTA F+L +Q
Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMVQH 70
Query: 427 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L + Y +++ TRELA Q+ + + K + G+ + GGM + K + V
Sbjct: 71 LLNVKEKNRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMK-QSVQLA 129
Query: 598 ACPHIVVGTPGRILALVNSKK 660
P ++VGTPGRI+ + + K
Sbjct: 130 KRPQVIVGTPGRIVYHIKNTK 150
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 85.4 bits (202), Expect = 1e-15
Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Frame = +1
Query: 259 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS 438
L++P IL+A+ G+ P+ +Q + IP + G D+L A++G GKTA F + LQ+L +
Sbjct: 8 LIEP-ILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQKLYKT 66
Query: 439 ESH--VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 612
+ + LV+ TRELA QI + +E + +Y +G++ +V FGG+ + + L++ I
Sbjct: 67 DHRKGIKALVLTPTRELAIQIGESFEAYGRY-TGLKHAVIFGGVGQKPQTDALRSGI-QI 124
Query: 613 VVGTPGRILALVN 651
+V TPGR+L L++
Sbjct: 125 LVATPGRLLDLIS 137
>UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|Rep:
Helicase - Limnobacter sp. MED105
Length = 539
Score = 85.4 bits (202), Expect = 1e-15
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF L P+I +AI G+ P+ +Q + IP + G+D++ A++G GKTA F L L +
Sbjct: 22 FADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNR 81
Query: 427 L--------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
L P+ V L++ TRELA Q++ ++K+ + +R +V +GG+ I
Sbjct: 82 LMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKF-TPLRSTVVYGGVDINPQI 140
Query: 583 EVLKTACPHIVVGTPGRILALVNSKKLN 666
+ L+ +V+ TPGR+L V K +N
Sbjct: 141 QTLRRGV-ELVIATPGRLLDHVQQKSIN 167
>UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable
ATP-dependent RNA helicase - Lentisphaera araneosa
HTCC2155
Length = 482
Score = 85.4 bits (202), Expect = 1e-15
Identities = 48/140 (34%), Positives = 75/140 (53%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D LK IL AI G++ P+ +Q++ + + G D L +AK+G GKTA F + LQ
Sbjct: 7 FQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPALQH 66
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L H VL++ REL QIS+E+ + K + RV+ GG + ++ L A
Sbjct: 67 LRAEVQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSLHGA-- 124
Query: 607 HIVVGTPGRILALVNSKKLN 666
++ TPGR++ + LN
Sbjct: 125 QVISATPGRLIDIKEQGLLN 144
>UniRef50_A4BBH5 Cluster: Probable ATP-dependent RNA helicase; n=1;
Reinekea sp. MED297|Rep: Probable ATP-dependent RNA
helicase - Reinekea sp. MED297
Length = 448
Score = 85.4 bits (202), Expect = 1e-15
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F F L P++ AI G+ P++VQ IPQA+ G D+L A++G GKTA ++L L +
Sbjct: 2 FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61
Query: 427 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
+ ++ + VLVM TRELA Q+ K+ E ++ +G++ + GG Q +L+
Sbjct: 62 VLSERKPKAGIRVLVMVPTRELAQQVMKDCEALTQ-QTGLKTVIIRGGQEFQYQASLLRR 120
Query: 598 ACPHIVVGTPGRILALVN 651
P IV+ TPGR+ +N
Sbjct: 121 N-PEIVIATPGRMTEHLN 137
>UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein;
n=7; Actinomycetales|Rep: DEAD/DEAH box helicase domain
protein - Arthrobacter sp. (strain FB24)
Length = 585
Score = 85.4 bits (202), Expect = 1e-15
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Frame = +1
Query: 232 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 411
I F D+ ++ +I+ ++ D G HP +Q +P A+ G DI+ QAK+G GKT F +
Sbjct: 34 IEEKSFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGI 93
Query: 412 ATLQQL----EPSESHVYV------LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGG 561
LQ++ +P + V LV+ TRELA Q++K+ E ++ R++ +GG
Sbjct: 94 PALQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAAR-KRNARIATIYGG 152
Query: 562 MPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
+ + L+ IVVGTPGR++ L K L+ + K
Sbjct: 153 RAYEPQVDSLQKGV-EIVVGTPGRLIDLYKQKHLSLKNVK 191
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 85.4 bits (202), Expect = 1e-15
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQ 423
F++ L EIL A+ GF P+ +Q + IP + G DI+ QA++G GKTA F + L+
Sbjct: 4 FKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
++ S + L++ TRELA Q+++E + K + V +GG I + L+
Sbjct: 64 TIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
Query: 604 PHIVVGTPGRILALVNSKKLNFE 672
IVVGTPGRIL ++ + + E
Sbjct: 123 -QIVVGTPGRILDHISRRTIKLE 144
>UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter
caesariensis|Rep: RNA helicase DbpA - Neptuniibacter
caesariensis
Length = 191
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/135 (30%), Positives = 70/135 (51%)
Frame = +1
Query: 232 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 411
+ S F L +L + G++ + +Q + +P+ + D++ +AK+G GKTA F +
Sbjct: 33 VSDSSFAKLALPKSVLSNLDQLGYKEMTAIQQQALPEVLAEKDLIAKAKTGSGKTAAFGI 92
Query: 412 ATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L +L P LV+C TRELA ++ E + +++ +++ GG PI L
Sbjct: 93 GLLLKLRPRNFATQALVLCPTRELATHVANELRKLARFTENLKILTLCGGQPIGPQIGSL 152
Query: 592 KTACPHIVVGTPGRI 636
+ H+VV TPGRI
Sbjct: 153 EHGA-HVVVRTPGRI 166
>UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3;
Sphingobacteriales|Rep: DEAD box-related helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 437
Score = 85.0 bits (201), Expect = 2e-15
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF +L ++ GF P+ +Q E IP + D++ A++G GKTA ++L L +
Sbjct: 3 FNDFNFNSGLLDSLSSMGFNKPTPIQTEAIPVIMSNSDLVACAQTGTGKTAAYMLPILHK 62
Query: 427 -LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE-VLKTA 600
+E + + LV+ TRELA QI ++ E FS +++ ++V+ GG D++ T
Sbjct: 63 IIESNTDSLDTLVLVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQRKALTD 122
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFKN 684
+IV+ TPGR+LA + S N + K+
Sbjct: 123 GANIVIATPGRLLAQLQSGTANLKQIKH 150
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 85.0 bits (201), Expect = 2e-15
Identities = 45/145 (31%), Positives = 74/145 (51%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L P +L A+ G+E PS +Q + IP + G +L A++G GKTA F L L +
Sbjct: 26 FAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLSR 85
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ + + +LV+ TRELA Q+++ + ++ V +GG LK
Sbjct: 86 IDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKRGA- 144
Query: 607 HIVVGTPGRILALVNSKKLNFETFK 681
++VGTPGR+L + L + K
Sbjct: 145 QVIVGTPGRMLDHLRKGTLKLDGLK 169
>UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_146,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 564
Score = 85.0 bits (201), Expect = 2e-15
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L +++A D G+ HP+ VQ + IP + G D+L + +G GKTA F+L +Q+
Sbjct: 118 FHQLKLNKALVKACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQR 177
Query: 427 LEPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
++ Y L++ TRELA Q + +E+ +KY + ++ G +PIQ+ E L+
Sbjct: 178 FGNLKNLQYSKALIILPTRELALQCFEMFEKLNKY-ANCTAALVIGAVPIQQQETELR-K 235
Query: 601 CPHIVVGTPGRIL-ALVNSKKLNFETFK 681
P I++ TPGR + L NS L + +
Sbjct: 236 YPDIIIATPGRTVDLLTNSSSLEIQNIE 263
>UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX23;
n=50; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX23 - Homo sapiens (Human)
Length = 820
Score = 85.0 bits (201), Expect = 2e-15
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
Frame = +1
Query: 214 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 393
KG + ++D L P IL I CG++ P+ +Q + IP + DI+ A++G GK
Sbjct: 382 KGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGK 441
Query: 394 TAVFV---------LATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVS 546
TA F+ L + ++E S+ Y +++ TRELA QI +E +F K + G+R
Sbjct: 442 TAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPL-GIRTV 500
Query: 547 VFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKL 663
GG+ + L+ C IV+ TPGR++ ++ ++ L
Sbjct: 501 AVIGGISREDQGFRLRMGC-EIVIATPGRLIDVLENRYL 538
>UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: DEAD/DEAH
box helicase-like - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 432
Score = 84.6 bits (200), Expect = 2e-15
Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Frame = +1
Query: 259 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--- 429
++KP +L AI D G+E P+ +Q IP + D+ A++G GKTA F L LQ+L
Sbjct: 8 VIKP-LLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQRLRKT 66
Query: 430 -EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ + + LV+ TREL+ QI ++ + ++K M G+ ++V GG ++ +++LK
Sbjct: 67 SDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNM-GINIAVLVGGKDLESQQKILKEGV- 124
Query: 607 HIVVGTPGRILALVN 651
IV+ TPGR+L V+
Sbjct: 125 DIVIATPGRVLEHVD 139
>UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Opitutaceae bacterium TAV2|Rep: DEAD/DEAH box
helicase domain protein - Opitutaceae bacterium TAV2
Length = 536
Score = 84.6 bits (200), Expect = 2e-15
Identities = 46/147 (31%), Positives = 77/147 (52%)
Frame = +1
Query: 199 PKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAK 378
P K V + + F L + A+ + G+ P+ +Q + +P + G D+ A+
Sbjct: 119 PIKPVTPVEIPPQDTAFSKLGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQ 178
Query: 379 SGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 558
+G GKTA F L L +L E + LV+ TRELA Q+ + ++++SKY + + +V +G
Sbjct: 179 TGTGKTAAFALPILHKLGAHERRLRCLVLEPTRELALQVEEAFQKYSKY-TDLTATVVYG 237
Query: 559 GMPIQKDEEVLKTACPHIVVGTPGRIL 639
G+ K E L+ +V TPGR+L
Sbjct: 238 GVGYGKQREDLQRGV-DVVAATPGRLL 263
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 84.6 bits (200), Expect = 2e-15
Identities = 47/147 (31%), Positives = 77/147 (52%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+ F L ++R + + G+E+ + +Q + I + G D+L + +G GKT F++ +
Sbjct: 55 TSFASLSLDSVMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPII 114
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
+ + L++ TRELA QI +E++ SK M + + F GG I D +VL
Sbjct: 115 EHALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMR-LHSATFIGGTNINTDMKVLSRK 173
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFK 681
H++VGTPGR+L L N K L K
Sbjct: 174 L-HVIVGTPGRLLDLTNRKLLKLNQVK 199
>UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like -
Pseudomonas putida W619
Length = 621
Score = 84.6 bits (200), Expect = 2e-15
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
+S F F L +L+A+ + F P+ VQ IP A+ G D+ A++G GKTA FVL
Sbjct: 181 TSVFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPL 240
Query: 418 LQQ---LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
L + L+ + + L++ TRELA Q K+ + FS++ + ++ + GG ++ +
Sbjct: 241 LNRLVDLKGARVEIRALILLPTRELAQQTLKQVQLFSQF-TYIKAGLVTGGEDFKEQAAM 299
Query: 589 LKTACPHIVVGTPGRILALVNSKKLN 666
L+ P +++GTPGR+L +N+ L+
Sbjct: 300 LRKV-PDVLIGTPGRLLEQLNAGNLD 324
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 84.6 bits (200), Expect = 2e-15
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF L IL A+ + ++ P+++Q IP + G DIL A++G GKTA F L L++
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62
Query: 427 LEPSESH-----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L E + VLV+ TRELA Q+++ + ++K + + V FGG+ + L
Sbjct: 63 LSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPV-FGGVSSYPQIQAL 121
Query: 592 KTACPHIVVGTPGRILALVNSKKLNFE 672
K+ IVV TPGR+L L L+ E
Sbjct: 122 KSGI-DIVVATPGRLLDLALQNALSLE 147
>UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Pseudomonas aeruginosa
Length = 397
Score = 84.6 bits (200), Expect = 2e-15
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF L P ++ AI D GF + + +Q + + + G D + +A++G GKTA F+++ + Q
Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 70
Query: 427 L----EPSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 585
L P E ++ L++ TREL QI+K+ +KY +G+ V F GGM K +
Sbjct: 71 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLK 129
Query: 586 VLKTACPHIVVGTPGRIL 639
L+ I+V TPGR+L
Sbjct: 130 QLEARFCDILVATPGRLL 147
>UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;
n=7; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 24 - Arabidopsis thaliana (Mouse-ear cress)
Length = 760
Score = 84.6 bits (200), Expect = 2e-15
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 5/144 (3%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA---- 414
F D +I+ AI +E P+ +Q + +P + G D++ AK+G GKTA FVL
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 415 TLQQLEPSESHVYVLVMC-HTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
+ Q E + V+C TRELA QI E ++FSK G+RVS +GGM + + L
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSK-AYGLRVSAVYGGMSKHEQFKEL 348
Query: 592 KTACPHIVVGTPGRILALVNSKKL 663
K C IVV TPGR++ ++ K L
Sbjct: 349 KAGC-EIVVATPGRLIDMLKMKAL 371
>UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase dbp10 - Schizosaccharomyces pombe (Fission
yeast)
Length = 848
Score = 84.6 bits (200), Expect = 2e-15
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Frame = +1
Query: 205 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 384
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 385 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 558
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 559 GMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
G+ +++ +L + P IVV TPGR L L KL + +
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFLHLKVEMKLELSSIE 215
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 84.2 bits (199), Expect = 3e-15
Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
Frame = +1
Query: 208 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 387
E + S S S GF+ L + L ++ G+ P+ +Q + IP + G DI+ A++G
Sbjct: 2 EEQQSKKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGS 61
Query: 388 GKTAVFVLATLQQLEP-SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 564
GKTA +++ + +LE S V L++C TRELA Q K + K ++ ++ S+ GG
Sbjct: 62 GKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNELGK-LTNLKASLIIGGS 120
Query: 565 PIQKDEEVLKTACPHIVVGTPGRILALVNSKKLN 666
+ + L + P I+V TPGR+ ++ ++
Sbjct: 121 KLSDQFDNLSSG-PDIIVATPGRLTFILEGANIS 153
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 84.2 bits (199), Expect = 3e-15
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Frame = +1
Query: 268 PEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-----E 432
PE+++A+ +CG+E + +Q + IP A G DI A++G GKTA F L +QQL
Sbjct: 10 PEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLIQQLLESGKS 69
Query: 433 PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 612
S L+ TRELA QI+ + ++KY + + V+ FGG + E +L+ I
Sbjct: 70 ASRKTARALIFAPTRELAEQIADNIKAYTKY-TNLSVAAIFGGRKMSSQERMLENGV-DI 127
Query: 613 VVGTPGRI 636
+V TPGR+
Sbjct: 128 LVATPGRL 135
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 84.2 bits (199), Expect = 3e-15
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L P + RA+ D GF PS +Q IP A+ G D++ QA++G GKTA F + L+Q
Sbjct: 46 FDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQ 105
Query: 427 LEPSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
L+ E +V+ TRELA Q++ E ER ++ + ++V GG + + L+
Sbjct: 106 LDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVP-TEIAVLSGGKNMNRQLRQLENG 164
Query: 601 CPHIVVGTPGRI 636
+VVGTPGR+
Sbjct: 165 -TQLVVGTPGRV 175
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 84.2 bits (199), Expect = 3e-15
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
+ F D L P +LRA+ + G+ P+ +Q + IP + G D+L A++G GKTA F L
Sbjct: 6 AQAFADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPL 65
Query: 418 LQQLEPS-----ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
L +L + ++ VLV+ TREL QI+ +E FS++ VRV+ FGG+
Sbjct: 66 LHRLAATPRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQP-VRVTTIFGGVSQVHQV 124
Query: 583 EVLKTACPHIVVGTPGRILALV 648
+ L+ I+V PGR+L L+
Sbjct: 125 KALEEGV-DIIVAAPGRLLDLI 145
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 84.2 bits (199), Expect = 3e-15
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLEPS 438
L +L + D GFE+P+E+Q + IP + D + A++G GKTA F L L ++ +
Sbjct: 20 LSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPLLDLIDVN 79
Query: 439 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 618
V L++ TRELA QI + E+ SK++ + V FGG I ++ I+V
Sbjct: 80 SREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDIRRGA-QIIV 138
Query: 619 GTPGRILALVNSKKLNFETFK 681
TPGR++ L+ +++ + K
Sbjct: 139 ATPGRLMDLMKRREVKLDALK 159
>UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=4;
Sphingobacteriales|Rep: Possible ATP-dependent RNA
helicase - Cytophaga hutchinsonii (strain ATCC 33406 /
NCIMB 9469)
Length = 463
Score = 84.2 bits (199), Expect = 3e-15
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = +1
Query: 235 HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA 414
H F + L ++L AI + G+ P+E+Q + IPQ + G DI+ A++G GKTA + L
Sbjct: 3 HPLNFEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALP 62
Query: 415 TLQQLEPSESH-VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L +++ ++ H ++ TREL QI ++ +KY + +R+ +GG+ + +E L
Sbjct: 63 ILMKIKYAQGHNPRAVIFGPTRELVMQIEIAMKQLAKY-TDLRIVALYGGIGPKLQKEHL 121
Query: 592 KTACPHIVVGTPGRILALVNSKKLNFETFK 681
+ I+V TPGR L L +++ + K
Sbjct: 122 QKGV-DIIVATPGRFLDLYLEEEIVLKEVK 150
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 84.2 bits (199), Expect = 3e-15
Identities = 46/147 (31%), Positives = 78/147 (53%)
Frame = +1
Query: 232 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 411
+ + F + L + RAI + G+E P+ VQ G D++ ++K+G GKTA F +
Sbjct: 17 VSQASFDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAI 76
Query: 412 ATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L+++ LVMC TRELA Q+++E+ +K+ + V +GG + + + L
Sbjct: 77 PILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRD-LSVVAVYGGASMGEQLQKL 135
Query: 592 KTACPHIVVGTPGRILALVNSKKLNFE 672
+ A I+VGTPGRI + + L +
Sbjct: 136 E-AGAEIIVGTPGRIYDHIRRRTLKLD 161
>UniRef50_Q5CWJ4 Cluster: Drs1p, eIF4a-1-family RNA SFII helicase;
n=3; Cryptosporidium|Rep: Drs1p, eIF4a-1-family RNA SFII
helicase - Cryptosporidium parvum Iowa II
Length = 573
Score = 84.2 bits (199), Expect = 3e-15
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 17/154 (11%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS- 438
L +L+A+ D F + +Q E IP A+ G DI+ +A++G GKTA F+L L++L S
Sbjct: 37 LSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLRSP 96
Query: 439 ---ESHVY------------VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQ 573
S V VLV+ +RELA Q E +KY + +V GGM IQ
Sbjct: 97 YVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMNIQ 156
Query: 574 KDEEVLKTACPHIVVGTPGRIL-ALVNSKKLNFE 672
+ E +LK PHIV+ TPGRIL L+N+ + E
Sbjct: 157 QQERILKCQ-PHIVIATPGRILDMLLNTLSIQLE 189
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 84.2 bits (199), Expect = 3e-15
Identities = 44/119 (36%), Positives = 68/119 (57%)
Frame = +1
Query: 298 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTR 477
GF+ PS +Q IP+ + G DI+ AK+G GKTA F + L QL V+ +++ TR
Sbjct: 23 GFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTR 82
Query: 478 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS 654
ELA QI +++ M+ V SV GG+ + ++ PHI+V TPGR+ + +N+
Sbjct: 83 ELAVQIGEQFNAIGAPMN-VNCSVVIGGID-NVTQALILDKRPHIIVATPGRLASHLNN 139
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 84.2 bits (199), Expect = 3e-15
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Frame = +1
Query: 226 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG-MDILCQAKSGMGKTAV 402
+ + F + L IL AI + GFE P+++Q + IP + +I+ QA++G GKTA
Sbjct: 1 MEVEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS 60
Query: 403 FVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
F + ++ + + + +++ TRELA Q++ E E K ++++ +GG I
Sbjct: 61 FAIPLIELVNENNG-IEAIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQI 118
Query: 583 EVLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
+ LK A +IVVGTPGRIL +N LN + K
Sbjct: 119 KALKNA--NIVVGTPGRILDHINRGTLNLKNVK 149
>UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP8 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 619
Score = 84.2 bits (199), Expect = 3e-15
Identities = 44/136 (32%), Positives = 75/136 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L ++ A+ + P+E+Q C+ + G D + AK+G GKT F L +++
Sbjct: 154 FESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVER 213
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+ V+ +V+ TRELA+Q+S+++ K + G+ + GGM + K + L+ A P
Sbjct: 214 IARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPL-GLTTATIVGGMDMMKQAQELE-ARP 271
Query: 607 HIVVGTPGRILALVNS 654
HI+V TPGR+ L+ S
Sbjct: 272 HIIVATPGRLCDLLRS 287
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 83.8 bits (198), Expect = 4e-15
Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 1/141 (0%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L ++ + G P+++Q + IP A+ D++ Q+ +G GKT ++L Q+++ S+
Sbjct: 10 LNQNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLPIFQKIDTSK 69
Query: 442 SHVYVLVMCHTRELAFQISKEYERFS-KYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 618
+ +++ T ELA QI+KE + S V + G +++ E LK PH++V
Sbjct: 70 REMQAIILAPTHELAMQINKEIQLLSGNSKVSVTSTPIIGNANVKRQIEKLKEK-PHVIV 128
Query: 619 GTPGRILALVNSKKLNFETFK 681
G+ GRIL L+ KK++ T K
Sbjct: 129 GSSGRILELIKKKKISAHTIK 149
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 83.8 bits (198), Expect = 4e-15
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQ 423
F F L ++ A+ D GF P+ +Q + +P + G D + A +G GKTA F + ++
Sbjct: 46 FESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLIE 105
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
++ + LV+ TRELA Q++++ K GVRV +GG + + +K
Sbjct: 106 NIDSTVKDTQALVLSPTRELALQVAEQLTLLGK-KKGVRVVTIYGGASYRTQIDGIKRGA 164
Query: 604 PHIVVGTPGRILALVNSKKLNFETFK 681
HIVV TPGR++ + K + ++ K
Sbjct: 165 -HIVVATPGRLVDFLEQKMIKLQSVK 189
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 83.8 bits (198), Expect = 4e-15
Identities = 50/140 (35%), Positives = 73/140 (52%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L EIL A+ D GF P+ +Q IP + D++ A++G GKTA F L L
Sbjct: 47 FASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 106
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ E +V LV+ TRELA Q ++ E F+ + + V +GG P LK
Sbjct: 107 VDADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRGA- 165
Query: 607 HIVVGTPGRILALVNSKKLN 666
+VVGTPGR++ L+ L+
Sbjct: 166 QVVVGTPGRVIDLIEKGALD 185
>UniRef50_Q011U7 Cluster: Myc-regulated DEAD/H box 18 RNA
helicase-like; n=9; Eukaryota|Rep: Myc-regulated DEAD/H
box 18 RNA helicase-like - Ostreococcus tauri
Length = 2729
Score = 83.8 bits (198), Expect = 4e-15
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 5/158 (3%)
Frame = +1
Query: 181 GSTEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDC-GFEHPSEVQHECIPQAVLGM 357
G+ A + E +GS ++ F + L RAI D GF H + VQ +P + G+
Sbjct: 2181 GTLARAVRVESQGSNAPSSTAAFANMGLTEASARAIRDVMGFTHATSVQDATLPHIMQGL 2240
Query: 358 DILCQAKSGMGKTAVFVLATLQQL----EPSESHVYVLVMCHTRELAFQISKEYERFSKY 525
D+L +AK+G GKT F+L +++L P +V LV+ TRELA QI +E + +
Sbjct: 2241 DVLARAKTGSGKTVGFLLPAIERLARAGAPQRGNVSCLVISPTRELASQIGEEAKSLLSF 2300
Query: 526 MSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 639
+ V FGG I + + LKT ++ TPGR++
Sbjct: 2301 -HPFKCQVVFGGTNINSERKRLKTEPVEFLIATPGRLI 2337
>UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box
ATP-dependent RNA helicase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DEAD box
ATP-dependent RNA helicase - Nasonia vitripennis
Length = 836
Score = 83.4 bits (197), Expect = 5e-15
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L +L+A+ F +P+ +Q IP A++G DI A +G GKTA ++L TL++
Sbjct: 156 FYNMNLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLER 215
Query: 427 L--EPSESHVY-VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L P + V VLV+ TREL Q+ + ++ S++ S V V + GG+ ++ E VL+
Sbjct: 216 LLYRPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTS-VEVGLSVGGLDVKVQESVLRK 274
Query: 598 ACPHIVVGTPGRIL-ALVNSKKLNFETFK 681
P IV+ TPGR++ L N+ + +T +
Sbjct: 275 N-PDIVIATPGRLIDHLANTPTFSLDTIE 302
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 83.4 bits (197), Expect = 5e-15
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Frame = +1
Query: 181 GSTEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 360
G+T + KE + + S G L P ++ A+ G+E P+ +Q +P + G D
Sbjct: 21 GATSPSTVKETSAADNTFESLG-----LLPPLVEALSALGYEEPTPIQRAALPPLLEGKD 75
Query: 361 ILCQAKSGMGKTAVFVLATLQQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMS 531
+L A +G GKTA F L LQ++ P + LV+ TRELA Q+++ R+ + +
Sbjct: 76 LLGIAATGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKL- 134
Query: 532 GVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFE 672
G+ V +GG I + VLK +VV TPGR L + K L E
Sbjct: 135 GISVVPLYGGQVISQQLRVLKRGV-DVVVATPGRALDHLQRKTLKLE 180
>UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2;
Gammaproteobacteria|Rep: ATP-dependent rna helicase Rhl
- Dichelobacter nodosus (strain VCS1703A)
Length = 432
Score = 83.4 bits (197), Expect = 5e-15
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 5/146 (3%)
Frame = +1
Query: 235 HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA 414
+++ F DF + +L A+ D F + +Q + +P + G D++ A++G GKTA F+L+
Sbjct: 7 NTAHFTDFPIHSALLEALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLS 66
Query: 415 TLQQL-----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 579
+ L P + +V+ TRELA QI KE + Y V ++++ GG I+
Sbjct: 67 LMHYLMTNPVHPKAKGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIY-GGTSIEHQ 125
Query: 580 EEVLKTACPHIVVGTPGRILALVNSK 657
+++ + +++GTPGRI+ L K
Sbjct: 126 KKLFQACNVDVIIGTPGRIIDLFKQK 151
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 83.4 bits (197), Expect = 5e-15
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+ F + +I + G ++P+ +Q IP A+ DI+ Q+++G GKT ++L
Sbjct: 3 TSFDKLEIDADIAEGLSKQGIKNPTAIQKVAIPLALKNKDIIGQSQTGSGKTLAYLLPIF 62
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMS-GVRVSVFFGGMPIQKDEEVLKT 597
Q+++ S+ L++ T EL QI K+ + S + +V G + I + E LK
Sbjct: 63 QKIDSSKRETQALILAPTHELVMQIDKQIKTLSSNAGLTINSTVMIGEVNIVRQIEKLKE 122
Query: 598 ACPHIVVGTPGRILALVNSKKLNFETFK 681
PHI+VG+ GR+L L+ KK++ T K
Sbjct: 123 K-PHIIVGSTGRVLELIKRKKISSHTIK 149
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 83.4 bits (197), Expect = 5e-15
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG-MDILCQAKSGMGKTAVFVLAT 417
S F ++ + +++I + G P+++Q + IP + D + A++G GKTA F L
Sbjct: 2 STFAGLGIRKDYIKSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGLPV 61
Query: 418 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG-VRVSVFFGGMPIQKDEEVLK 594
L ++ + H+ L++ TREL QI K+ +F+KY+ + + FGG I + LK
Sbjct: 62 LHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNNLK 121
Query: 595 TACPHIVVGTPGRILALV 648
HIV+ TPGR++ L+
Sbjct: 122 RT-THIVIATPGRLIDLI 138
>UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n=7;
Trypanosomatidae|Rep: ATP-dependent RNA helicase,
putative - Leishmania major
Length = 803
Score = 83.4 bits (197), Expect = 5e-15
Identities = 48/148 (32%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Frame = +1
Query: 244 GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ 423
GF+ F L+ +L AI+ GF P+ +Q + IP + G D++ A++G GKTA F++ L
Sbjct: 23 GFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN 82
Query: 424 QLEPSESHVYV--LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L+ V + LV+ TREL+ QI + +K++ +R + GG + + E+L
Sbjct: 83 TLKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLD-LRFAALVGGDSMDQQFELL-A 140
Query: 598 ACPHIVVGTPGRILALVNSKKLNFETFK 681
+ P +VV TPGR+L ++ L+ + +
Sbjct: 141 SNPDVVVATPGRLLHIMEEASLHLTSVR 168
>UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1;
Idiomarina loihiensis|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 474
Score = 83.0 bits (196), Expect = 7e-15
Identities = 43/131 (32%), Positives = 68/131 (51%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L P +L + + G++ + VQ +P + D + +A +G GKT F L L +
Sbjct: 23 FNQLNLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLAK 82
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
LE LV+C TRELA Q++ E + +K M +++ GG P + L+
Sbjct: 83 LEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGA- 141
Query: 607 HIVVGTPGRIL 639
H++VGTPGR+L
Sbjct: 142 HVLVGTPGRVL 152
>UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1;
Thiomicrospira crunogena XCL-2|Rep: ATP-dependent RNA
helicase - Thiomicrospira crunogena (strain XCL-2)
Length = 401
Score = 83.0 bits (196), Expect = 7e-15
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L P++L AI + + P+ +Q E IP+ +L D+L A +G GKTA FVL LQ
Sbjct: 3 FEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPALQF 62
Query: 427 L--EPSESH-VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L +P S VL++ TRELAFQI K ++ + +V GG K E+L++
Sbjct: 63 LLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCP-FESNVVTGGFASDKQLEILQS 121
Query: 598 ACPHIVVGTPGRILALVNSK 657
I+V TPGR+L +++ +
Sbjct: 122 KI-DILVATPGRLLNIMSKE 140
>UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: ATP-dependent RNA
helicase - Neptuniibacter caesariensis
Length = 417
Score = 83.0 bits (196), Expect = 7e-15
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Frame = +1
Query: 298 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE----PSESHVYVLVM 465
G++ P+ +Q + IP + G D++ A++G GKTA FVL L++L P + + LV+
Sbjct: 20 GYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSIPAPGNNLTHALVL 79
Query: 466 CHTRELAFQISKEYERFSKYM-SGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILA 642
TRELA Q+S+ +R+S+ +R +GG I + L C IVV TPGR+L
Sbjct: 80 VPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQSLSKGC-DIVVATPGRLLD 138
Query: 643 LVNSKKLNFETFK 681
L+ L+ K
Sbjct: 139 LMRKNALDLRGLK 151
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 83.0 bits (196), Expect = 7e-15
Identities = 41/135 (30%), Positives = 76/135 (56%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
+ EI + P+ VQ + IP + D++ QA++G GKT F+L L+++ +
Sbjct: 10 ISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILERVNVEK 69
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
+ L++ TRELA QI+ E ++ ++ + G+ + +GG +++ LK + HI++G
Sbjct: 70 PTIQALIITPTRELAIQITAETKKLAE-VKGINILAAYGGQDVEQQLRKLKGSI-HIIIG 127
Query: 622 TPGRILALVNSKKLN 666
TPGR+L + K +N
Sbjct: 128 TPGRLLDHLRRKTIN 142
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 83.0 bits (196), Expect = 7e-15
Identities = 48/144 (33%), Positives = 81/144 (56%)
Frame = +1
Query: 235 HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA 414
+S G DFL E L+++ G+E + +Q IP + G D++ A++G GKTA F L
Sbjct: 12 NSLGLPDFL--QENLQSL---GYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALP 66
Query: 415 TLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L ++ LV+C TRELA Q+++ + + + M G+R+ FGG +++ + L+
Sbjct: 67 ILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLR 126
Query: 595 TACPHIVVGTPGRILALVNSKKLN 666
HIVV TPGR+L + + ++
Sbjct: 127 EG-THIVVATPGRLLDHIERRSID 149
>UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5;
Clostridium|Rep: DEAD/DEAH box helicase-like -
Clostridium cellulolyticum H10
Length = 437
Score = 83.0 bits (196), Expect = 7e-15
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L+ ++ A+ P+++Q + IP+A+ D++ + +G GKT ++L +
Sbjct: 5 FESMELEKSLVEALKKESITVPTDIQQKAIPEALKNRDVILHSSTGTGKTLAYLLPLFMK 64
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV-FFGGMPIQKDEEVLKTAC 603
L + + L++ T ELA Q+ ++ E S+ S G + I + + LK
Sbjct: 65 LSAEKKEMQALILVPTHELAIQVVRQIELLSQNSEIKATSTPIIGDVNIMRQIDKLKLK- 123
Query: 604 PHIVVGTPGRILALVNSKKLNFETFK 681
PHI+VGTPGRIL L+ +K++ T K
Sbjct: 124 PHIIVGTPGRILELIQKRKISAHTIK 149
>UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 394
Score = 83.0 bits (196), Expect = 7e-15
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG-MDILCQAKSGMGKTAVFVLAT 417
S + +F L P I+RAI DCGF P+ +Q EC+ A G DI+ A++G GKT F L
Sbjct: 17 SAWFEFDLHPLIMRAIQDCGFTTPTPIQRECLLPATKGRCDIIGAAQTGSGKTLAFALPI 76
Query: 418 LQQLEPSESHVY-VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
LQ+L V L++ TRELA Q+ + Y + + V GGM +K E +L
Sbjct: 77 LQRLLSQGIDVLRALIVAPTRELALQVCAMMRAVAVY-TKIDVCPVVGGMSKEKQERLLN 135
Query: 595 TACPHIVVGTPGRI 636
P ++V TPGR+
Sbjct: 136 RK-PAVIVATPGRM 148
>UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus
vannamei|Rep: Vasa-like protein - Penaeus vannamei
(Penoeid shrimp) (European white shrimp)
Length = 703
Score = 83.0 bits (196), Expect = 7e-15
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
+ F+ L+P +L IV G+ P+ VQ IP + G DI+ A++G GKTA F+L
Sbjct: 260 AESFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPM 319
Query: 418 LQQLEPSE--SHVYV-------LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 570
L + + S+ + LV+C TRELA QI +E +FS + S + V +GG
Sbjct: 320 LHYILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFS-HSSVAKCCVAYGGAAG 378
Query: 571 QKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
+ + + C HI+V TPGR+L + K+ F + K
Sbjct: 379 FHQLKTIHSGC-HILVATPGRLLDFLEKGKIVFSSLK 414
>UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|Rep:
MGC114699 protein - Xenopus laevis (African clawed frog)
Length = 758
Score = 82.6 bits (195), Expect = 9e-15
Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+D L +L+AI F P+ +Q CIP +LG DI A +G GKTA F+L L++
Sbjct: 183 FQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLER 242
Query: 427 L--EPSESHV-YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L +P E+ V VLV+ TREL Q+ + +++ + V + GG+ ++ E L++
Sbjct: 243 LIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQF-TEVTTCLAVGGLDVKTQEAALRS 301
Query: 598 ACPHIVVGTPGRIL 639
P +++ TPGR++
Sbjct: 302 G-PDVLIATPGRLI 314
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 82.6 bits (195), Expect = 9e-15
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F L P +L+A+ + GF P+ +Q + IP A+ G D++ A +G GKTA F+L L Q
Sbjct: 3 FSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQ 62
Query: 427 L-EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
L + LV+ TRELA QI ++ + + + + + FGG+ I+ E +
Sbjct: 63 LIDRPRGTTRALVITPTRELAAQILEDLNDLAVH-TPISAAAVFGGVSIRPQEHAFRRGV 121
Query: 604 PHIVVGTPGRIL 639
+++GTPGR+L
Sbjct: 122 D-VLIGTPGRLL 132
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 82.6 bits (195), Expect = 9e-15
Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Frame = +1
Query: 268 PEILRA-IVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSES 444
P+ LR + G+E ++VQ + +P A G D++ QA++G GKTA F L L++ +PS
Sbjct: 13 PDALRTGLAQLGWEFATQVQRDTVPIARQGTDVIGQARTGSGKTAAFGLPILERCQPS-G 71
Query: 445 HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 624
+ LV+ TRELA Q+++E+E + +G+ + +GG ++K + L I+VGT
Sbjct: 72 KLQALVLAPTRELANQVAQEFE-LLQGNAGLSIVTVYGGTDLEKQAKTLAKGV-DIIVGT 129
Query: 625 PGRIL 639
PGR++
Sbjct: 130 PGRVM 134
>UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=3;
Thermus thermophilus|Rep: Heat resistant RNA dependent
ATPase - Thermus thermophilus
Length = 510
Score = 82.6 bits (195), Expect = 9e-15
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+DF LKPEIL A+ G P+ +Q +P A+ G D++ QA++G GKT F L ++
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 427 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L PS+ LV+ TRELA Q++ E + ++ V V +GG K +E L
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAV---YGGTGYGKQKEALLR 119
Query: 598 ACPHIVVGTPGRIL 639
VV TPGR L
Sbjct: 120 GA-DAVVATPGRAL 132
>UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=2;
Polaribacter|Rep: Putative ATP-dependent RNA helicase -
Polaribacter dokdonensis MED152
Length = 411
Score = 82.6 bits (195), Expect = 9e-15
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL-- 420
F D L I +AI + F P+ VQ + IP + +++ A++G GKTA F L +
Sbjct: 3 FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPIINL 62
Query: 421 ----QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
Q E E + LV+ TRELA QI + ++ +SKY S +R + FGG+ ++ +E+
Sbjct: 63 LFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKY-SNLRSTAVFGGVSLEPQKEI 121
Query: 589 LKTACPHIVVGTPGRILAL 645
L I+V TPGR++ L
Sbjct: 122 LAKGV-DILVATPGRLIDL 139
>UniRef50_A4S107 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 478
Score = 82.6 bits (195), Expect = 9e-15
Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE--- 432
L + LRA+ G+E P+ VQ +C+P G D L AK+G GKT F+L Q+
Sbjct: 62 LDVDCLRALRRMGYESPTAVQAQCLPVIWSGHDALVMAKTGSGKTLAFLLPAYAQISRQR 121
Query: 433 --PSESHVYVLVMCHTRELAFQISKEYERFSKY-MSGVRVSVFFGGMPIQKDEEVLKTAC 603
LV+ TRELA QI+ E +F+K+ +SG R FGG+ ++D+ A
Sbjct: 122 PLTKREGPIALVLAPTRELASQIANEAHKFTKFGVSGARCCAIFGGVS-KRDQFKKLRAG 180
Query: 604 PHIVVGTPGR---ILALVNSKKLNFETF 678
IVV TPGR +L + NS L T+
Sbjct: 181 AEIVVATPGRLVDVLCMKNSTNLRRVTY 208
>UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 783
Score = 82.6 bits (195), Expect = 9e-15
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L +L+A+ GF P+ +Q + IP A+ G DIL A +G GKTA F+L L++
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
Query: 427 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L +S + VL++ TRELA Q E +++ S + + GG+ K +EV
Sbjct: 252 LLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQF-SNITSCLIVGGLS-NKAQEVELR 309
Query: 598 ACPHIVVGTPGRIL 639
P +V+ TPGR++
Sbjct: 310 KSPDVVIATPGRLI 323
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 82.6 bits (195), Expect = 9e-15
Identities = 46/134 (34%), Positives = 71/134 (52%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
S F L E+ ++ G++ P+ +Q E +P A+ G DI+ A++G GKTA F L
Sbjct: 50 SPTFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPI 109
Query: 418 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
LQ+L Y L++ TREL QIS++ + GV V GG+ + +
Sbjct: 110 LQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTL-GVTVVTLVGGLD-HNTQAIALA 167
Query: 598 ACPHIVVGTPGRIL 639
PH+VVG+PGR++
Sbjct: 168 KKPHVVVGSPGRVV 181
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 82.6 bits (195), Expect = 9e-15
Identities = 45/131 (34%), Positives = 75/131 (57%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + +K +L A+ D GFE +Q IP + G D++ QA +G GKT + ++ LQ+
Sbjct: 4 FEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISMLQE 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ + L++ TRELA QI++E ++F+KY + VR +GG + + LK
Sbjct: 64 IKEG-GGIQGLIVAPTRELAVQITEEVKKFAKY-TKVRPVAIYGGQSMGVQLDALKRGA- 120
Query: 607 HIVVGTPGRIL 639
I+V TPGR++
Sbjct: 121 EILVATPGRLI 131
>UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA
helicase 29; n=4; core eudicotyledons|Rep: Putative
DEAD-box ATP-dependent RNA helicase 29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 845
Score = 82.6 bits (195), Expect = 9e-15
Identities = 45/140 (32%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Frame = +1
Query: 238 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 417
S GF L P + AI G++ P+ +Q + +P + G+D++ A++G GKTA F++
Sbjct: 27 SGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPM 86
Query: 418 LQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L++L+ + V L++ TR+LA Q K + K+ + +RVS+ GG ++ E L
Sbjct: 87 LEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF-TDLRVSLLVGGDSMEDQFEEL 145
Query: 592 KTACPHIVVGTPGRILALVN 651
T P +++ TPGR++ L++
Sbjct: 146 -TKGPDVIIATPGRLMHLLS 164
>UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;
n=8; Viridiplantae|Rep: DEAD-box ATP-dependent RNA
helicase 21 - Arabidopsis thaliana (Mouse-ear cress)
Length = 733
Score = 82.6 bits (195), Expect = 9e-15
Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Frame = +1
Query: 214 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 393
KGS + + + L E+L+A+ G++ PS +Q IP + D++ A++G GK
Sbjct: 304 KGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
Query: 394 TAVFV---LATLQQLEP-SESH----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 549
TA FV LA + +L P SE + Y +VM TRELA QI +E +F+ Y+ G RV+
Sbjct: 364 TAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL-GFRVTS 422
Query: 550 FFGGMPIQKDEEVLKTACPHIVVGTPGRIL 639
GG I++ + C IV+ TPGR++
Sbjct: 423 IVGGQSIEEQGLKITQGC-EIVIATPGRLI 451
>UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: Probable ATP-dependent RNA
helicase - Oceanobacter sp. RED65
Length = 449
Score = 82.2 bits (194), Expect = 1e-14
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 3/141 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ F L IL+ I GF ++VQ + IP+A+ D++ A++G GKTA FV+ LQ
Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61
Query: 427 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L + S L++ TRELA Q+ K+ + +K+ +G++ + GG K + L
Sbjct: 62 LLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKF-TGIQSGMITGGQEF-KFQAALFR 119
Query: 598 ACPHIVVGTPGRILALVNSKK 660
P I++ TPGR++ + KK
Sbjct: 120 KNPEIIIATPGRLIDHLKQKK 140
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 82.2 bits (194), Expect = 1e-14
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Frame = +1
Query: 226 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAV 402
+SIH F D + + + + D P+E+Q + IP + DI+ AK+G GKTA
Sbjct: 1 MSIH---FSDLGINLALQQRLNDLKIITPTEIQEKVIPIVLNDKEDIVALAKTGTGKTAA 57
Query: 403 FVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
F L LQ ++ + + +++ TREL QI+ F+++ S V ++ GG+PI+
Sbjct: 58 FGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIPIKPQI 117
Query: 583 EVLKTACPHIVVGTPGRILALVNSKKLNFET 675
E LK A HI+V TPGR+ LV + ++ ++
Sbjct: 118 ERLKEA-THIIVATPGRLADLVKREAIDIKS 147
>UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent
RNA helicase; n=4; Bacteroidetes|Rep: RhlE-like DEAD box
family ATP-dependent RNA helicase - Gramella forsetii
(strain KT0803)
Length = 455
Score = 82.2 bits (194), Expect = 1e-14
Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Frame = +1
Query: 226 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 405
+ +H+ F+D L + A+ D F+ P+ +Q + + G D++ A++G GKT +
Sbjct: 4 IKLHTLSFQDLNLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAY 63
Query: 406 VLATLQQLEPSES-HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
+L L+ L+ SE + +L+M TREL Q+ +E E+ +KY++ +RV+ +GG+ I
Sbjct: 64 LLPLLRMLKYSEQKNPRILIMVPTRELVVQVVEEIEKLAKYIN-LRVAGVYGGVNINTQH 122
Query: 583 EVLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
+ L IVV TP R+ LV + + ++ +
Sbjct: 123 QDLMQGL-DIVVATPRRLYDLVLRRAVQLKSIQ 154
>UniRef50_Q3ZDP1 Cluster: Vasa-like protein; n=7; Neoptera|Rep:
Vasa-like protein - Anopheles gambiae (African malaria
mosquito)
Length = 596
Score = 82.2 bits (194), Expect = 1e-14
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Frame = +1
Query: 211 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 390
V G H F L+ E++ + + P+ +Q IP + G D++ A++G G
Sbjct: 164 VSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSG 223
Query: 391 KTAVFVLATLQQLEPSESHV-------YVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 549
KTA F+L + L E + Y++++ TRELA QI E +F+ + + ++V V
Sbjct: 224 KTAAFMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFA-HGTKLKVCV 282
Query: 550 FFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFE 672
+GG +Q ++++ C H++V TPGR+L ++ + FE
Sbjct: 283 SYGGTAVQHQLQLMRGGC-HVLVATPGRLLDFIDRGYVTFE 322
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 81.8 bits (193), Expect = 2e-14
Identities = 44/142 (30%), Positives = 75/142 (52%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
+GF F L P IL+A+ F+ PS +Q E IP D++ +++G GKTA +
Sbjct: 15 NGFITFNLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPIC 74
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
++ + + L++ TRELA Q + E ++ KY GV+ FGG + LK
Sbjct: 75 NRVNTELTDIQALIIVPTRELALQYATETQKIGKY-KGVKAFAIFGGEDSALQQSKLKHG 133
Query: 601 CPHIVVGTPGRILALVNSKKLN 666
++V TPGR++ + S++++
Sbjct: 134 V-QVLVATPGRLIDFIYSRQID 154
>UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09528 protein - Schistosoma
japonicum (Blood fluke)
Length = 454
Score = 81.8 bits (193), Expect = 2e-14
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Frame = +1
Query: 268 PEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESH 447
PEI+ + D G P+EVQ CIP + G D++ AK+G GKTA F++ LQ L
Sbjct: 10 PEIVELLRDKGISAPTEVQKGCIPVILEGNDVVACAKTGSGKTAAFLIPILQSLMTELKP 69
Query: 448 VYVLVMCHTRELAFQISKEYERFSKYMSG--VRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
+Y L++ TRELA QI ++ + V V GG I + + PHI+V
Sbjct: 70 LYALIITPTRELAHQIGEQAAGLNLIQGEPLCNVLVITGGRSI-IHQSIDLARSPHIIVS 128
Query: 622 TPGRILALVNSK 657
TPGR+ L+ ++
Sbjct: 129 TPGRLADLLRTQ 140
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 81.8 bits (193), Expect = 2e-14
Identities = 44/112 (39%), Positives = 65/112 (58%)
Frame = +1
Query: 319 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQIS 498
VQ CIP+ + G DIL A++G GKT F + LQ+L +Y L++ TRELAFQI+
Sbjct: 115 VQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIA 174
Query: 499 KEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS 654
+++ K ++ ++ SV GG + L PH+VV TPGR+ L+ S
Sbjct: 175 EQFTALGKPIT-LKCSVIVGGRSLIHQARELSER-PHVVVATPGRLADLIES 224
>UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent rRNA
helicase RRP3 - Encephalitozoon cuniculi
Length = 400
Score = 81.8 bits (193), Expect = 2e-14
Identities = 49/143 (34%), Positives = 73/143 (51%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D + +++ + G P+EVQ + IP + G D++ +++G GKT FVL +
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L Y LV+ TREL+ QI++ + F +G+RV + GG L P
Sbjct: 63 LLQKNRSFYCLVVAPTRELSSQIAECFNMFQ--ATGLRVCLLVGGANFNVQANQLSKR-P 119
Query: 607 HIVVGTPGRILALVNSKKLNFET 675
H+VVGTPGRI V K +F T
Sbjct: 120 HVVVGTPGRIAEHVLKTK-SFRT 141
>UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1;
Ustilago maydis|Rep: ATP-dependent RNA helicase DRS1 -
Ustilago maydis (Smut fungus)
Length = 932
Score = 81.8 bits (193), Expect = 2e-14
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F F L +LRA+ F P+ +Q IP A+ G DI+ A +G GKTA F++ T+
Sbjct: 333 SSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTI 392
Query: 421 QQL-------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 579
++L P E+ VL++ TRELA Q + +K+ + +R + GG+ ++
Sbjct: 393 ERLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKF-TDIRFCLCVGGLSVKSQ 451
Query: 580 EEVLKTACPHIVVGTPGRIL 639
E LK P +V+ TPGR++
Sbjct: 452 EAELKLR-PEVVIATPGRLI 470
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 81.8 bits (193), Expect = 2e-14
Identities = 43/133 (32%), Positives = 74/133 (55%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F+++ + +ILRA+ G+ P++VQ IP A+ D++ ++++G GKTA F +
Sbjct: 2 SHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLC 61
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
+ E+ L++ TRELA Q+ ++ ++ ++ + FG K + LK
Sbjct: 62 ELANWDENKPQALILTPTRELAVQVKEDITNIGRF-KRIKATAVFGKSSFDKQKAELKQK 120
Query: 601 CPHIVVGTPGRIL 639
HIVVGTPGR+L
Sbjct: 121 -SHIVVGTPGRVL 132
>UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leptospirillum sp. Group II UBA|Rep: Superfamily II DNA
and RNA helicase - Leptospirillum sp. Group II UBA
Length = 444
Score = 81.4 bits (192), Expect = 2e-14
Identities = 55/146 (37%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L PEILRA+ D G P+ +Q + IP + G D+L A++G GKT F+L L ++
Sbjct: 8 LSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHKIAEGR 67
Query: 442 SHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 612
H LV+ TRELA QI + + ++KY+ + GG+ + E LK I
Sbjct: 68 RHGIRNRALVLSPTRELATQIHQAAKDYAKYLH-TNAVLLVGGVDFIRQERNLKRNW-DI 125
Query: 613 VVGTPGRILALVNSKKLNFETFKNTS 690
VV TPGR+L V L T NTS
Sbjct: 126 VVATPGRLLDHVRRNNL---TLANTS 148
>UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase
Dbp45A; n=5; Endopterygota|Rep: Probable ATP-dependent
RNA helicase Dbp45A - Drosophila melanogaster (Fruit
fly)
Length = 521
Score = 81.4 bits (192), Expect = 2e-14
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L+P +++ + G + + +Q +CIP + G D + AK+G GKT F L L++L
Sbjct: 14 LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73
Query: 442 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 621
+ LV+ T ELA+QIS+++ + M GVRV V GG + + L PHIVV
Sbjct: 74 VSHFALVLTPTHELAYQISEQFLVAGQAM-GVRVCVVSGGTDQMVESQKLMQR-PHIVVA 131
Query: 622 TPGRIL-ALVNSKKLNFETFK 681
PGR+ L +F+ K
Sbjct: 132 MPGRLADHLTGCDTFSFDNLK 152
>UniRef50_UPI0000498707 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 600
Score = 80.6 bits (190), Expect = 3e-14
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Frame = +1
Query: 256 FLLKPEILRAIVDCGFEHPSEVQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQ--- 423
+ L I+RA+ D GF +P+E+Q I +A+ DI+ A +G GKT F++ +Q
Sbjct: 67 YKLDLRIIRALYDLGFINPTEIQQLSIKKALKFHKDIVGSAPTGSGKTLSFLIPIVQRLI 126
Query: 424 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
+L+ ++S V+++ TRELA QI++ +++ KY+ V GGM I K +L
Sbjct: 127 ELDKTDSTQCVIIV-PTRELAVQINEHFKKLIKYLPQFTSLVIVGGMAIPKQVRLLSQE- 184
Query: 604 PHIVVGTPGRILALVNSKKLN 666
P IV+GTPGRI L + + N
Sbjct: 185 PTIVIGTPGRIYELYSETEHN 205
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 80.6 bits (190), Expect = 3e-14
Identities = 45/105 (42%), Positives = 62/105 (59%)
Frame = +1
Query: 334 IPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYER 513
IP A+ G D L QAK+G GKTA F L L L+ E L++ TRELA QI +
Sbjct: 3 IPVALQGRDCLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRD 59
Query: 514 FSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALV 648
F++Y++ VR F+GG + D +VL+ +V+GTPGRI L+
Sbjct: 60 FARYLN-VRTFAFYGGTKVFGDLKVLRGGKVDVVIGTPGRIKDLI 103
>UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;
Sulfurovum sp. NBC37-1|Rep: ATP-independent RNA helicase
DbpA - Sulfurovum sp. (strain NBC37-1)
Length = 453
Score = 80.6 bits (190), Expect = 3e-14
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Frame = +1
Query: 268 PEILRAIVDC-GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSES 444
PE L ++ GF +E+Q + I + G DIL Q+K+G GKT F + + + +
Sbjct: 11 PEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIPAVMGTDVKSN 70
Query: 445 HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 624
+V+ TRELA Q++ E + + Y + +++ +GG+P++ + L HI++GT
Sbjct: 71 KPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAKGA-HILIGT 129
Query: 625 PGRILALVNSKKLNFETFK 681
PGRI + L E+ K
Sbjct: 130 PGRIQDHLAKGTLTLESIK 148
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 80.6 bits (190), Expect = 3e-14
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L +L+A+ G+ P+ +Q + IP + G D+L A++G GKTA F+L ++ +
Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 427 LEPSESHV-----YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L +++ + +LV+ TREL QI+ + + ++G++V GG + KD L
Sbjct: 64 LREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGA-LAGLKVQSIVGGTSVNKDRNKL 122
Query: 592 KTACPHIVVGTPGRILALVNSKKLN 666
I++ TPGR+L L++ K N
Sbjct: 123 HRG-TDILIATPGRLLDLIDQKAFN 146
>UniRef50_Q4W7T8 Cluster: VASA RNA helicase; n=1; Artemia
franciscana|Rep: VASA RNA helicase - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 726
Score = 80.6 bits (190), Expect = 3e-14
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--EP 435
L+P+IL I G+ P+ VQ IP + D++ A++G GKT +++ + +L E
Sbjct: 311 LRPKILDNIKKSGYTQPTPVQKWAIPVIMKKRDLMACAQTGSGKTGAYLIPIINRLIEEG 370
Query: 436 SESHVY-------VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
+ Y +VMC TRELA QI KE +FS Y + ++ V +GG+ + + +K
Sbjct: 371 CAASSYDETQTPEAVVMCPTRELAIQIFKEAVKFS-YDTIIKPVVVYGGVAPRYQSDKVK 429
Query: 595 TACPHIVVGTPGRILALVNSKKLNFETFK 681
+ C +I+VGTPGR++ +N NF K
Sbjct: 430 SGC-NILVGTPGRLIDFMNRGVFNFSACK 457
>UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 402
Score = 80.6 bits (190), Expect = 3e-14
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ + P+I+ A+ G+ P+ +Q + I QA+ G D+ A++G GKT F++ L Q
Sbjct: 3 FQALGVHPDIIAAVESMGWSKPTPIQEKTIKQAIAGEDVSGAAETGSGKTGAFLIPLLHQ 62
Query: 427 -LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 603
LE Y +++ TREL QI++ + S ++ V ++ G +++ ++ K
Sbjct: 63 LLEKDRPEKYGIILAPTRELVIQIAEVAQLMSAKLNITIVPIYGGVDDVEQMAQLAKR-- 120
Query: 604 PHIVVGTPGRILALVNSKK 660
PHI+V TPGR+ L+ K
Sbjct: 121 PHIIVATPGRLAQLIRDAK 139
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 80.6 bits (190), Expect = 3e-14
Identities = 48/131 (36%), Positives = 73/131 (55%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ ++ ILR+I D FE P+E+Q IP + G DI+ A +G GKT F +Q+
Sbjct: 4 FKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQK 63
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
+E + LV+ TRELA Q+ + FS++ +RV+ +GG+ I L+ A
Sbjct: 64 IEKGNG-IRALVLTPTRELAEQVQNSLKEFSRHKQ-LRVAPIYGGVAINPQIRQLERA-- 119
Query: 607 HIVVGTPGRIL 639
+VV TPGR+L
Sbjct: 120 DVVVATPGRLL 130
>UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG425
homolog; n=4; Mycoplasma|Rep: Probable ATP-dependent RNA
helicase MG425 homolog - Mycoplasma pneumoniae
Length = 450
Score = 80.6 bits (190), Expect = 3e-14
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F + + P ++ + D P+ +Q IPQ + +++ + +G GKTAVF + +
Sbjct: 3 STFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVI 62
Query: 421 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
+ L +PS+ LV+ TRELA QI + F+K+ + ++V GG+PI + + L+
Sbjct: 63 ETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKH-THLKVVSLIGGIPIWQQLKQLE 121
Query: 595 TACPHIVVGTPGRILALVNSKKLNFE 672
P IVVGT GR++ L+ + FE
Sbjct: 122 NQ-PEIVVGTMGRVMDLLERGVIKFE 146
>UniRef50_P09052 Cluster: ATP-dependent RNA helicase vasa; n=5;
Eukaryota|Rep: ATP-dependent RNA helicase vasa -
Drosophila melanogaster (Fruit fly)
Length = 661
Score = 80.6 bits (190), Expect = 3e-14
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 5/160 (3%)
Frame = +1
Query: 208 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 387
+V GS V F L+ I+ + G++ P+ +Q IP G D++ A++G
Sbjct: 234 KVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGS 293
Query: 388 GKTAVFVLATLQQL--EPSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVF 552
GKTA F+L L +L +P E + V+++ TRELA QI E +F+ + S +++ +
Sbjct: 294 GKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA-FESYLKIGIV 352
Query: 553 FGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFE 672
+GG + E + C H+V+ TPGR+L V+ + FE
Sbjct: 353 YGGTSFRHQNECITRGC-HVVIATPGRLLDFVDRTFITFE 391
>UniRef50_Q6F1J3 Cluster: ATP-dependent RNA helicase; n=4;
Mollicutes|Rep: ATP-dependent RNA helicase - Mesoplasma
florum (Acholeplasma florum)
Length = 460
Score = 80.2 bits (189), Expect = 5e-14
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F DF K I + + FE P+ +Q E IP +++ + +G GKT F+L L
Sbjct: 9 FSDFGFKKYINDTLKEINFETPTRIQAEIIPLIKKHQNVIALSHTGTGKTHAFLLPILNN 68
Query: 427 L--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
L + + +V L++ TRELA QI + F+K + ++V +F GG I K E L
Sbjct: 69 LRFDQDKKNVQALIIAPTRELAKQIFDNVKPFTKNETQLKVDLFIGGEDINKQIESLNKR 128
Query: 601 CPHIVVGTPGRILALVNSKKLNFET 675
P I VGTP RI L L T
Sbjct: 129 QPTIAVGTPTRIKELYEQNHLKATT 153
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 80.2 bits (189), Expect = 5e-14
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 8/148 (5%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F F L EIL+AI + G+ P+ +Q + IP + G D++ A++G GKTA F L +Q+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 427 L--------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 582
L P+ V L++ TRELA Q++ ++K+ + +R +V FGG+ +
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGGVDMNPQM 131
Query: 583 EVLKTACPHIVVGTPGRILALVNSKKLN 666
L+ I++ TPGR+L V K N
Sbjct: 132 AELRRGV-EILIATPGRLLDHVQQKTAN 158
>UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4;
Bacteria|Rep: ATP-dependent RNA helicase protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 413
Score = 80.2 bits (189), Expect = 5e-14
Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF---VLAT 417
F + L P I +++ + GF P+++Q + IP + G D+L A++G GKTA F VL T
Sbjct: 3 FESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVLNT 62
Query: 418 LQQLEPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L ++ SE + + LVM TRELA QIS+ +++ Y + +R GG+ Q+ +
Sbjct: 63 LINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAY-TRLRTVCITGGVE-QEAQIAAA 120
Query: 595 TACPHIVVGTPGRILALVNSKKLNFETFK 681
I+V TPGR+ L+ K + K
Sbjct: 121 DYGIDILVATPGRMFDLIYQKHIKITRVK 149
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 80.2 bits (189), Expect = 5e-14
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F++ L + +A+V+ ++ P+ +Q + IP A+ G D+L A++G GKTA L L Q
Sbjct: 4 FQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPILNQ 63
Query: 427 LEPSE-----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 591
L + H LV+ TRELA QI ++ + +++ +R + +GG+ + L
Sbjct: 64 LGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLK-LRSVLIYGGVGQGNQVKAL 122
Query: 592 KTACPHIVVGTPGRILALVN 651
K HI+V TPGR+L L+N
Sbjct: 123 KRGA-HILVATPGRLLDLMN 141
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,321,136
Number of Sequences: 1657284
Number of extensions: 13750364
Number of successful extensions: 36052
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 34286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35269
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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