Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7n22
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 228 5e-61
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 114 1e-26
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 96 5e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 95 9e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 90 3e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 89 8e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 4e-18
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 85 1e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 80 3e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 75 1e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 71 2e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 71 2e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 70 4e-13
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 68 2e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 5e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 65 8e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 63 3e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 61 1e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 51 1e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.0
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 8.0
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 25 8.0
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 228 bits (558), Expect = 5e-61
Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Frame = +1
Query: 184 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 363
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 364 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 543
LCQAKSGMGKTAVFVL+TLQQ+EP + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 544 SVFFGGMPIQKDEEVL--KTACPHIVVGTPGRILALVNSKKLNFETFKN 684
+VF+GG+ I++D E K+ PHIVV TPGR+ ALV K L + K+
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKH 200
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 114 bits (275), Expect = 1e-26
Identities = 60/141 (42%), Positives = 88/141 (62%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 607 HIVVGTPGRILALVNSKKLNF 669
HIVVGTPGR+L L +F
Sbjct: 164 HIVVGTPGRVLDLAGKGVADF 184
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 95.9 bits (228), Expect = 5e-21
Identities = 55/139 (39%), Positives = 76/139 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 607 HIVVGTPGRILALVNSKKL 663
H+VVGTPGR+ ++ + L
Sbjct: 139 HVVVGTPGRVHDMIQRRAL 157
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 95.1 bits (226), Expect = 9e-21
Identities = 55/151 (36%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 421 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 595 TACPHIVVGTPGRILALVNSKKL--NFETFK 681
PH+VV TPGR+ +++N L NF+ K
Sbjct: 241 KH-PHVVVATPGRLWSVINENNLTGNFKKIK 270
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 89.8 bits (213), Expect = 3e-19
Identities = 52/147 (35%), Positives = 74/147 (50%)
Frame = +1
Query: 241 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 420
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
Q ++ S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFK 681
H+V GTPGR+ ++ + L K
Sbjct: 140 -QHVVSGTPGRVTDMIRRRNLRTRNVK 165
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 88.6 bits (210), Expect = 8e-19
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 607 HIVVGTPGRIL-ALVNSKKLNFETFK 681
H++V TPGR++ L N+K + + K
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLK 191
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 86.2 bits (204), Expect = 4e-18
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Frame = +1
Query: 214 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 393
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 394 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 564
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 565 PIQKDEEVLKTACPHIVVGTPGRIL 639
++ E+ L+ P IV+ TPGR +
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFI 392
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 84.6 bits (200), Expect = 1e-17
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Frame = +1
Query: 205 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 384
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 385 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 558
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 559 GMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFETFK 681
G+ +++ +L + P IVV TPGR L L KL + +
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFLHLKVEMKLELSSIE 215
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 80.2 bits (189), Expect = 3e-16
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 6/151 (3%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 423
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 424 -----QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 588
Q++ ++ ++ L++ TRELA Q+ E+ + + S + +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 589 LKTACPHIVVGTPGRILALVNSKKLNFETFK 681
L P IV+ TP R + V S L + K
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLK 166
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 74.9 bits (176), Expect = 1e-14
Identities = 39/136 (28%), Positives = 74/136 (54%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 427 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 607 HIVVGTPGRILALVNS 654
H+VV TPGR+ L+ S
Sbjct: 127 HVVVATPGRLADLIRS 142
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.9 bits (166), Expect = 2e-13
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 441
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 442 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 606
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 607 HIVVGTPGRILALVNS 654
IVV TPGR++ ++++
Sbjct: 543 EIVVCTPGRMIDVLSA 558
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 70.5 bits (165), Expect = 2e-13
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Frame = +1
Query: 187 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 360
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 361 ILCQAKSGMGKTAVFVLATLQQ------LEPSESHVYVLVMCHTRELAFQISKEYERFSK 522
++ + +G GKT + L + L P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 523 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLN 666
S +R + +GG+P L I + TPGR+L +++S K N
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGRLLDMLDSNKTN 266
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 69.7 bits (163), Expect = 4e-13
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 427 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 595 TACPHIVVGTPGRILALVNSKKLNFETFKNTSSLM 699
+++V TPGR+L + + K F F+N SL+
Sbjct: 210 KGV-NLLVATPGRLLDHLQNTK-GF-VFRNLRSLV 241
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.7 bits (158), Expect = 2e-12
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 420
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 421 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 600
+++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 601 CPHIVVGTPGRILALVNSKKLNFETFK 681
IV+GTPG ++ L+ ++L+ K
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQLDARDIK 256
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.1 bits (154), Expect = 5e-12
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Frame = +1
Query: 262 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 423
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 424 QLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 597
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 598 ACPHIVVGTPGRIL 639
HIVV TPGR+L
Sbjct: 375 GA-HIVVATPGRLL 387
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 65.3 bits (152), Expect = 8e-12
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Frame = +1
Query: 301 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---PSESHVYVLVMCH 471
++ P+ +Q P + G D++ A++G GKT F + LQ L ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 472 TRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVVGTPGRILAL 645
TRELA Q YE + + G + V +GG P + K A +++GTPGR+L L
Sbjct: 245 TRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTPGRLLDL 299
Query: 646 VNSKKLN 666
+N ++
Sbjct: 300 INDGSID 306
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 63.3 bits (147), Expect = 3e-11
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 427 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 594
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 595 TACPHIVVGTPGRILALVNSKKLNFET 675
+I+V TPGR+L ++ + +NF+T
Sbjct: 160 RM--NILVCTPGRLLQHID-QAVNFDT 183
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.3 bits (142), Expect = 1e-10
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Frame = +1
Query: 298 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL---EP--SESHVYVL 459
GFE + VQ + + + + QAK+G GKT F+L + + +P + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 460 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 636
++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TPGR+
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 51.2 bits (117), Expect = 1e-07
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Frame = +1
Query: 247 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 426
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 427 L---EPSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 573
+ + E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 574 KDEEVLKTACPHIVVGTPGRI---LALVNSKKLNFETFKNTSSLMSV 705
D + P +V+GTPGR+ L+ ++SK L +L+ +
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEMLSHISSKHLEILILDEADTLIDM 169
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 2e-04
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +1
Query: 319 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 495
+Q IP D+L A +G GKT ++ LQ+L+ Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 496 SKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNFE 672
++ E+ S S + + IQ+ L+ + +GTP R++ + + L+FE
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY-DMCIGTPMRLVQAIQT-GLSFE 188
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 364 LCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 495
+ Q G GK+ V + A LE + SHV +LV C T QI
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQI 434
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 498 TYLESQLSGVAH-YKHVNVALGRFQLLQCCQNKHGCLTH 385
+Y+E + ++ Y++ N +FQ L+C N L H
Sbjct: 685 SYIEEKKHSISWCYQNANTTYSKFQSLECQTNLEDMLKH 723
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 378 LGLTKYVHTEDGLRNAFVLNFGRMLKTAINNSAE 277
LGL +HT D + L+ G +L+ A N AE
Sbjct: 147 LGLMNQIHTFDEISGVITLDSGVILENADNFLAE 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,305
Number of Sequences: 5004
Number of extensions: 60010
Number of successful extensions: 190
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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