Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n21
         (208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    29   0.68 
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384...    25   6.3  
03_01_0209 - 1647146-1647238,1647574-1647614,1647651-1647718,164...    25   6.3  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 18   VDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDXXLTQDELXFLANFLVTKLDE 185
            +DSS ++ + Q D L +  LL N      L   VDD   T+DE+  L   L +KL+E
Sbjct: 1417 IDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEILNMVLKSKLEE 1467


>03_01_0512 -
           3849275-3849333,3849429-3849531,3849610-3849654,
           3849876-3849974,3850078-3850146,3850251-3850310,
           3850540-3850633,3850875-3850949,3851101-3851219,
           3851433-3851600,3852743-3852928
          Length = 358

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +3

Query: 18  VDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDXXLTQDELXFLANFLVTKLDEAYQL 197
           + SSN + RRQ   L+  +L + S T  + R+V     ++D L  L N L+ +   A Q+
Sbjct: 244 LSSSNYIIRRQATQLLGDILLDKSNTTAMVRYVS----SKDNLIILMN-LLREQSRAIQV 298

Query: 198 PAY 206
            A+
Sbjct: 299 EAF 301


>03_01_0209 -
           1647146-1647238,1647574-1647614,1647651-1647718,
           1647762-1647779,1647886-1648361,1648626-1648994,
           1649044-1649092,1650362-1650405,1650901-1651116
          Length = 457

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  FXVDSSNKLSRRQVDFLIHALLNNVSVTFT 101
           F  D   K+  R++DFL H L    S  FT
Sbjct: 197 FMTDGYLKMMWRRIDFLGHVLAKGYSFIFT 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,895,608
Number of Sequences: 37544
Number of extensions: 41945
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)