Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n21
         (208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   1.4  
AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical ...    25   5.6  
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    25   5.6  

>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -1

Query: 112 NLCNV-NVTLTLFNNACIKKSTCRLLSL 32
           NL NV NV++++F+NA IKK+T   + L
Sbjct: 370 NLINVENVSVSIFDNAGIKKATYEPIDL 397


>AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.7 protein.
          Length = 536

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 94  VTLTLFNNACIKKSTCRLLSL-LEESTQKY 8
           V +T+ +  C+K S C   SL L  ST +Y
Sbjct: 364 VNITVMDGVCLKNSKCPCPSLELSSSTARY 393


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 94  VTLTLFNNACIKKSTCRLLSL 32
           VT+   N  C+K S CR  S+
Sbjct: 187 VTINQMNGVCVKNSKCRCASM 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,649,628
Number of Sequences: 27780
Number of extensions: 45043
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)