Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7n13
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 0.46
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 2.4
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 25 3.2
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 3.2
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.3
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 25 5.6
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 24 7.4
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 24 7.4
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 24 7.4
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 24 7.4
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 7.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 9.8
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 0.46
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 206 KSKPFYYYACLICMCKNVY 150
++ PF YY CL C CK+++
Sbjct: 542 RADPFAYYYCLQCECKSLH 560
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 110 DISCYSNSYLWIFYKHFCTCILNMHNNKKVL 202
D + Y+NS W+ K+F L H N K++
Sbjct: 30 DSTAYNNSLDWLRSKNFKVSCLLKHFNSKII 60
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.4 bits (53), Expect = 3.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 230 TNFFSISTKSKPFYYYACLIC 168
T+ F ST KP Y CLIC
Sbjct: 4 TSHFVASTVKKPRSRYGCLIC 24
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 215 ISTKSKPFYYYACLICMCKNVYKISINMNLNNNL 114
+ +S P YY + L C +++ +NM +N+N+
Sbjct: 286 LDLRSVPIYYASSLARKCMAIFQTYVNM-MNDNI 318
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 74 FMNCLEMVNMPFDISCYSNSY 136
F N + +V +PF +C NSY
Sbjct: 24 FSNAIRIVLLPFSSNCCRNSY 44
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 343 YTNYYVKILFSSYYFIDL 290
Y YY+ LF +YY I L
Sbjct: 192 YPQYYMSPLFKAYYLIQL 209
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 24.2 bits (50), Expect = 7.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 47 ENNQTGHVIFMNCLEMVNMPFDISCYSNSYLWIFYKHFCTCILNMHNNKKVLILYL 214
+ +T +IF C + F I +S L + H +C+LN+++ +LYL
Sbjct: 305 KKTRTSWLIFQ-CSGEFRLVFSIE---SSNLLVIESHVPSCVLNINSQVIAFLLYL 356
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 270 QKSYKNIIMKMKHYKFFLNKYKIKTFL 190
QK K+YK + KYK+K+ L
Sbjct: 1073 QKHLTQFEFSAKNYKSLIQKYKVKSVL 1099
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 267 KSYKNIIMKMKHYKFFLNK 211
++YKNI++ + H + FLN+
Sbjct: 398 QTYKNIVLVVSHDRSFLNE 416
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 68 HGLFDYSHII 39
HG FDYSH+I
Sbjct: 224 HGWFDYSHVI 233
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 349 LLYTNYYVKILFSSYYFIDLS 287
LL T Y V +L S+YY LS
Sbjct: 77 LLLTKYPVYVLLSTYYLTPLS 97
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 92 MVNMPFDISCYSNSYLWIFYKHFCTC 169
M + + +SC+S+SY+ + Y+ C
Sbjct: 2137 MGTLKYKLSCFSDSYMGVDYEKEFEC 2162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,795
Number of Sequences: 5004
Number of extensions: 34831
Number of successful extensions: 63
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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