Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7n13
(396 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC099650-1|AAH99650.1| 907|Homo sapiens leucine-rich repeat-con... 32 0.79
BC096326-1|AAH96326.1| 883|Homo sapiens LGR5 protein protein. 32 0.79
BC096325-1|AAH96325.1| 883|Homo sapiens LGR5 protein protein. 32 0.79
BC096324-1|AAH96324.1| 907|Homo sapiens leucine-rich repeat-con... 32 0.79
AF062006-1|AAC28019.1| 907|Homo sapiens orphan G protein-couple... 32 0.79
AF061444-1|AAC77911.1| 907|Homo sapiens G protein-coupled recep... 32 0.79
BC036744-1|AAH36744.1| 331|Homo sapiens RNASEH2B protein protein. 29 4.2
BC010174-1|AAH10174.1| 308|Homo sapiens RNASEH2B protein protein. 29 4.2
BC007332-1|AAH07332.1| 308|Homo sapiens RNASEH2B protein protein. 29 4.2
BC005088-1|AAH05088.1| 308|Homo sapiens RNASEH2B protein protein. 29 4.2
BC001397-1|AAH01397.1| 308|Homo sapiens RNASEH2B protein protein. 29 4.2
AL137881-1|CAI13913.1| 312|Homo sapiens ribonuclease H2, subuni... 29 4.2
AK223340-1|BAD97060.1| 312|Homo sapiens hypothetical protein FL... 29 4.2
BC024199-1|AAH24199.1| 503|Homo sapiens TRIM69 protein protein. 29 7.4
>BC099650-1|AAH99650.1| 907|Homo sapiens leucine-rich
repeat-containing G protein-coupled receptor 5 protein.
Length = 907
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 227 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 117
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>BC096326-1|AAH96326.1| 883|Homo sapiens LGR5 protein protein.
Length = 883
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 227 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 117
NF + P+ Y C +C+N YKIS N +N
Sbjct: 440 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 476
>BC096325-1|AAH96325.1| 883|Homo sapiens LGR5 protein protein.
Length = 883
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 227 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 117
NF + P+ Y C +C+N YKIS N +N
Sbjct: 440 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 476
>BC096324-1|AAH96324.1| 907|Homo sapiens leucine-rich
repeat-containing G protein-coupled receptor 5 protein.
Length = 907
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 227 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 117
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>AF062006-1|AAC28019.1| 907|Homo sapiens orphan G protein-coupled
receptor HG38 protein.
Length = 907
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 227 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 117
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>AF061444-1|AAC77911.1| 907|Homo sapiens G protein-coupled receptor
LGR5 protein.
Length = 907
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 227 NFFSISTKSKPFYYYACLICMCKNVYKISINMNLNNN 117
NF + P+ Y C +C+N YKIS N +N
Sbjct: 464 NFPELKVIEMPYAYQCCAFGVCENAYKISNQWNKGDN 500
>BC036744-1|AAH36744.1| 331|Homo sapiens RNASEH2B protein protein.
Length = 331
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 294 IYHYRQCLQKSYKNIIMKMKHYKFFLNK 211
IY + CLQ+ ++ + K KH+ +F+N+
Sbjct: 50 IYLFNMCLQQLFEVKVFKEKHHSWFINQ 77
>BC010174-1|AAH10174.1| 308|Homo sapiens RNASEH2B protein protein.
Length = 308
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 294 IYHYRQCLQKSYKNIIMKMKHYKFFLNK 211
IY + CLQ+ ++ + K KH+ +F+N+
Sbjct: 50 IYLFNMCLQQLFEVKVFKEKHHSWFINQ 77
>BC007332-1|AAH07332.1| 308|Homo sapiens RNASEH2B protein protein.
Length = 308
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 294 IYHYRQCLQKSYKNIIMKMKHYKFFLNK 211
IY + CLQ+ ++ + K KH+ +F+N+
Sbjct: 50 IYLFNMCLQQLFEVKVFKEKHHSWFINQ 77
>BC005088-1|AAH05088.1| 308|Homo sapiens RNASEH2B protein protein.
Length = 308
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 294 IYHYRQCLQKSYKNIIMKMKHYKFFLNK 211
IY + CLQ+ ++ + K KH+ +F+N+
Sbjct: 50 IYLFNMCLQQLFEVKVFKEKHHSWFINQ 77
>BC001397-1|AAH01397.1| 308|Homo sapiens RNASEH2B protein protein.
Length = 308
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 294 IYHYRQCLQKSYKNIIMKMKHYKFFLNK 211
IY + CLQ+ ++ + K KH+ +F+N+
Sbjct: 50 IYLFNMCLQQLFEVKVFKEKHHSWFINQ 77
>AL137881-1|CAI13913.1| 312|Homo sapiens ribonuclease H2, subunit B
protein.
Length = 312
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 294 IYHYRQCLQKSYKNIIMKMKHYKFFLNK 211
IY + CLQ+ ++ + K KH+ +F+N+
Sbjct: 50 IYLFNMCLQQLFEVKVFKEKHHSWFINQ 77
>AK223340-1|BAD97060.1| 312|Homo sapiens hypothetical protein
FLJ11712 variant protein.
Length = 312
Score = 29.5 bits (63), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 294 IYHYRQCLQKSYKNIIMKMKHYKFFLNK 211
IY + CLQ+ ++ + K KH+ +F+N+
Sbjct: 50 IYLFNMCLQQLFEVKVFKEKHHSWFINQ 77
>BC024199-1|AAH24199.1| 503|Homo sapiens TRIM69 protein protein.
Length = 503
Score = 28.7 bits (61), Expect = 7.4
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 62 GHVIFMNCLEMVNMPFDISCYSNSYLWIFYKHFCTCILNMHNNKKVLILYLLRK 223
G + F N M + I +SN+++ Y +FC C+ + NK+ L++LRK
Sbjct: 452 GQLSFYNAKTMTH----IYTFSNTFMEKLYPYFCPCLNDGGENKEP--LHILRK 499
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,789,031
Number of Sequences: 237096
Number of extensions: 996253
Number of successful extensions: 1917
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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