Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n13
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    30   0.69 
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    28   2.1  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    28   2.8  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    28   2.8  
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    27   4.9  
U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    27   6.4  
U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf (diva...    27   6.4  
AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z83106-3|CAB05495.2|  339|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    26   8.5  
U28928-3|AAA68336.1|  236|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    26   8.5  

>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 315 FLLTTLLIYHYRQCLQKSYKNIIMKMKHYKFFLNKYKIKT 196
           FLL+T  ++      Q +Y+N + K+   K  LN  K++T
Sbjct: 7   FLLSTFFVFSIVSGQQTNYENCLTKLNKMKNILNNLKLET 46


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
 Frame = -3

Query: 367 FCIKHNLLYTN------YYVKILFSSYYFI 296
           FC  H+L Y N      YY+KILF+S Y +
Sbjct: 191 FCHAHSLYYLNPYGRLSYYLKILFTSLYVL 220


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 391 FLNCKRFYFCIKHNLLYTNYYVKILFSSYYFI-DLSL*AMFTKIV*KHYYENETLQIFSQ 215
           FLN KRF  C+    L   ++++   S + FI   S   +++  +  H   N  + + S 
Sbjct: 28  FLNLKRFLICLNVKFLGKQHFIRFSISPHPFIRSNSSKYIYSPFIFCHRTANSCVAVCSL 87

Query: 214 *VQNQNLFIIMH 179
                +L +++H
Sbjct: 88  FTCLHSLVLLLH 99


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 391 FLNCKRFYFCIKHNLLYTNYYVKILFSSYYFI-DLSL*AMFTKIV*KHYYENETLQIFSQ 215
           FLN KRF  C+    L   ++++   S + FI   S   +++  +  H   N  + + S 
Sbjct: 28  FLNLKRFLICLNVKFLGKQHFIRFSISPHPFIRSNSSKYIYSPFIFCHRTANSCVAVCSL 87

Query: 214 *VQNQNLFIIMH 179
                +L +++H
Sbjct: 88  FTCLHSLVLLLH 99


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 53  NQTGHVIFMNCLEMVNMPF 109
           N TG   F+NC++MV +PF
Sbjct: 328 NLTGMNDFLNCVQMVQLPF 346


>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 53  NQTGHVIFMNCLEMVNMPF 109
           N TG   F+NC++M+ +PF
Sbjct: 417 NLTGMNDFLNCVQMIQLPF 435


>U23525-6|AAU05559.1|  471|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           b protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 53  NQTGHVIFMNCLEMVNMPF 109
           N TG   F+NC++M+ +PF
Sbjct: 331 NLTGMNDFLNCVQMIQLPF 349


>AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical
           protein T05G11.4 protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 316 FSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQ*VQNQNLF 191
           FS YYF+      +  K+  K    N T  I S   QN NLF
Sbjct: 254 FSVYYFMSSRYRKIAAKLFGKANNSNSTFTIHSTGTQNFNLF 295


>Z83106-3|CAB05495.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.4 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 237 KHYKFFLN--KYKIKTFLLLCMFNMHVQKCL*NIHKYEFE*QLMSNGILTISKQFIKITW 64
           K+ K+  N  +Y+ K  +L   F + +   L  + +  FE   M  G++ I   FI+I W
Sbjct: 138 KYPKYVENWMEYRFKALILAVSFGLKMVTEL--VLRKRFEIMQMFGGLMPIQNGFIRIHW 195


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 364 CIKHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIV*KHYYENETL 230
           C   N LY   Y   LFSS+Y + L L  +F+      Y  ++TL
Sbjct: 103 CFYDNFLY---YQTALFSSFYCVSLFLDRLFSLNPRSFYNSHQTL 144


>U28928-3|AAA68336.1|  236|Caenorhabditis elegans Hypothetical
           protein C44B7.5 protein.
          Length = 236

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 246 MKMKHYKFFLNKYKIKTFLLLCMFNMHVQKCL*NIHKY 133
           M+ KH+   L    I + L L     H+  CL + HKY
Sbjct: 1   MRKKHFNMILKLALISSLLALAASRTHLTDCL-DDHKY 37


>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 117 VVIQIHIYGYFINIFA 164
           ++ QIH++G+FI+ F+
Sbjct: 60  IIFQIHLFGFFIHFFS 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,385
Number of Sequences: 27780
Number of extensions: 188032
Number of successful extensions: 403
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)