Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n07
         (133 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0GYC3 Cluster: Putative uncharacterized protein; n=2; ...    46   2e-04
UniRef50_P24649 Cluster: DNA-binding protein; n=6; Nucleopolyhed...    39   0.025
UniRef50_A0BNA6 Cluster: Chromosome undetermined scaffold_118, w...    31   6.6  

>UniRef50_Q0GYC3 Cluster: Putative uncharacterized protein; n=2;
           Nucleopolyhedrovirus|Rep: Putative uncharacterized
           protein - Plutella xylostella multiple
           nucleopolyhedrovirus
          Length = 74

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = -1

Query: 103 AGVSNHMWHRXKNDDGDDKPCL 38
           A VSNHMW+R KN DGDDKPCL
Sbjct: 24  ACVSNHMWYRLKNGDGDDKPCL 45


>UniRef50_P24649 Cluster: DNA-binding protein; n=6;
          Nucleopolyhedrovirus|Rep: DNA-binding protein - Bombyx
          mori nuclear polyhedrosis virus (BmNPV)
          Length = 65

 Score = 38.7 bits (86), Expect = 0.025
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +1

Query: 43 MVYRRRRRSSTGATYGL 93
          MVYRRRRRSSTGATYGL
Sbjct: 1  MVYRRRRRSSTGATYGL 17


>UniRef50_A0BNA6 Cluster: Chromosome undetermined scaffold_118,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_118,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2626

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  NYSYINYTTLNMVYRRRRRSSTGATY 87
           +Y Y+ Y+T+N VY ++ RSS    Y
Sbjct: 97  SYDYLTYSTINSVYHQKERSSAELFY 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,873,764
Number of Sequences: 1657284
Number of extensions: 1481570
Number of successful extensions: 4236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4236
length of database: 575,637,011
effective HSP length: 24
effective length of database: 535,862,195
effective search space used: 10181381705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)