Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n07
         (133 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   6.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   6.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   6.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     18   8.1  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
          transcription factor Maxillopediaprotein.
          Length = 523

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 70 KNDDGDDK 47
          + DDGDDK
Sbjct: 67 QGDDGDDK 74


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 70 KNDDGDDK 47
          + DDGDDK
Sbjct: 15 QGDDGDDK 22


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 70  KNDDGDDK 47
           + DDGDDK
Sbjct: 198 QGDDGDDK 205


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 67  NDDGDDKPCLKLCN 26
           ++DGD+KP   L N
Sbjct: 236 HNDGDNKPDTILVN 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,782
Number of Sequences: 336
Number of extensions: 462
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 24
effective length of database: 114,521
effective search space used:  2175899
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)