Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n07
         (133 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    27   0.34 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   3.2  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    23   5.5  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    23   7.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    22   9.7  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    22   9.7  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 78  CHIWFDTPAPFFSRYH 125
           CHI +D PAP F  +H
Sbjct: 26  CHISYDGPAPVFEYFH 41


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 109 NGAGVSNHMWHRXKND 62
           N A V  H+W R +ND
Sbjct: 655 NSATVEKHIWERKEND 670


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 30  HNFKHGLSSPSSFFXRCHIWFDT 98
           HNF  GL+  S+FF    I   T
Sbjct: 307 HNFMDGLAITSAFFTNTSIGIST 329


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 45  GLSSPSSFFXRCHIWFDTPAPFFS 116
           G  +PSS    C ++ DTPA   S
Sbjct: 399 GYGTPSSAATLCPLYRDTPAAIVS 422


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 12  LQLHKLHNFKHGLSSPSSFF 71
           L ++   N+K+ +S+P SFF
Sbjct: 277 LPVNSSPNWKYSISNPDSFF 296


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 52  DKPCLKLCNLCSCSFYL 2
           DKP   L N+ SC  Y+
Sbjct: 171 DKPSSYLSNIISCGIYI 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,229
Number of Sequences: 5004
Number of extensions: 6249
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)