Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7n07
         (133 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    29   0.69 
05_02_0047 + 6006808-6007129,6009229-6009890,6009980-6010129,601...    26   4.9  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    26   4.9  

>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 115 LKNGAGVSNHMWHRXKNDDGDDKPCL 38
           L  G G +NH  H   +DD DD P L
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWL 81


>05_02_0047 +
           6006808-6007129,6009229-6009890,6009980-6010129,
           6010765-6010857,6011370-6011675
          Length = 510

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 18  LHKLHNFKHGLSSPSSFFXRCHIWFDTPAPFF 113
           +H LH+ +H LSSP       H W   P P F
Sbjct: 192 VHMLHDAEHALSSPC---LPAHPWRSFPFPGF 220


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +3

Query: 48  LSSPSSFFXRCHIWFDTPAPFFSRYHTQ 131
           LSSPS    R    FDT  PF  R HTQ
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQ 651


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,014
Number of Sequences: 37544
Number of extensions: 45845
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 24
effective length of database: 13,892,292
effective search space used: 263953548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)