Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7m18
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 34 0.023
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 31 0.21
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.28
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 28 1.5
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 27 2.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.0
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 27 2.6
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 3.4
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 3.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 4.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.5
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 25 7.9
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 7.9
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = +3
Query: 273 SAPLDDLPPPYS--SVVGTTHY-----GFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
S+ D+PPPYS SV G + Y G+ + ++ A P F PP V P P
Sbjct: 315 SSTATDIPPPYSTPSVAGASDYSTPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQP 374
Query: 432 EGVTNAT 452
T
Sbjct: 375 AAAAVTT 381
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 345 PALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
P++SNP D+V + P P P V PHP
Sbjct: 132 PSISNPPVDTVISDSPTSPHPPSFVQPHP 160
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 264 QGPSAPLDDLPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEGVT 443
Q P L LPP ++ + T+ VAP P S+ + A PF P V P P T
Sbjct: 447 QSPPVLLPTLPPIQTTTIQTSRE--VAPP-----PSSINSNRAASPFRPTSVSPQPSSPT 499
Query: 444 NA 449
+
Sbjct: 500 KS 501
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 357 NPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNM-QPSR 473
N P + G YPP +T P P+ +N TV+ QP R
Sbjct: 4 NSNPYNGGQYPPYNTYTRPNYSPNNGSQSNNTVHQYQPPR 43
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 204 EESVKLTKNFCCTGIIMSTHQGPSAPLDDLPPPYSSVVG 320
EES+ + +F T + TH PSAP PP+ +V G
Sbjct: 151 EESLHMASSFERTKKFVPTHSHPSAP---NKPPFETVAG 186
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 390 PAKPFTPPGVYPHPEGVTNATVNMQPS 470
PA P PP P P G NA ++ P+
Sbjct: 635 PATPSNPPRSLPPPSGQVNAPMSQTPN 661
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 409 GVNGLAGGYAPTESGIGLLSAGATKP*CVVPTTDEYGGGRSSSG 278
G NG+ G P +GIG KP T YG G S+ G
Sbjct: 179 GGNGIVGAQIPLGAGIGFAQKYLEKP---TTTFALYGDGASNQG 219
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 249 IMSTHQGPSAPLDDLPPPYSSVVGTT 326
++ST + SA DD+PPPYS T
Sbjct: 1026 MLSTLKSISAIPDDVPPPYSEFADDT 1051
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 476 YSRRLHIYSCICYTFGMGVNSWRSKWFSRWICSYR 372
Y L +Y Y + NSW++ WF + S R
Sbjct: 173 YKNHLEVYGRTTYNIVLH-NSWQASWFKSMLTSVR 206
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 360 PIPDSVGAYPPAKPFTPPGVYPHPEGVTNATVNMQP 467
P P G+ PP P P +Y P T TV+ P
Sbjct: 347 PTPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNP 382
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 436 PSGWG*TPGGVNGLAGGYAPTESGIG 359
P G+G PGG G GG+ G G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFG 262
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +3
Query: 270 PSAPLDDLPP--PYSSVVGTTHYGFVAPA--LSNPIPDSVGA---YPPAKPFTPPGVYPH 428
PSAP LPP P S +G + P+ ++ P+P + A PPA P PP P
Sbjct: 425 PSAP-PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
Query: 429 P 431
P
Sbjct: 484 P 484
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 312 VVGTTHYGFVAPALSNP---IPDSVGAYPPAKPFTPP 413
++G + YG+ + +N ++ G+YPP +P T P
Sbjct: 92 LLGPSRYGYYPQSYANQSYTYGNNFGSYPPTQPSTQP 128
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 390 PAKPFTPP-GVYPHPEGVTNATVNMQPS 470
PA+P T P G YPHP + TVN S
Sbjct: 126 PAEPGTAPLGTYPHP--CVHLTVNTDVS 151
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 608 HTFNCWVDLLDHYSLFTMLPGFDPVLL 688
HTF+ W L H+ F G DP +L
Sbjct: 290 HTFSEWRALFMHFFPFINSEGVDPAIL 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,590
Number of Sequences: 5004
Number of extensions: 52672
Number of successful extensions: 170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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