Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7m18
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.049
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.049
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z81460-1|CAB03830.2| 215|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 31 0.80
U40413-2|AAK39174.1| 296|Caenorhabditis elegans Hypothetical pr... 31 0.80
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 31 0.80
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 31 0.80
U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical... 31 1.1
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z99280-2|CAE18017.1| 129|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 29 3.2
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 28 5.6
U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical p... 28 5.6
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 28 5.6
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 28 7.4
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.1 bits (77), Expect = 0.049
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +3
Query: 243 GIIMSTHQGPSAPLDDLPPPYSSVVGTTHYGFVAPALSN--PIPDSVGAYPPAKPFTPPG 416
G+ S +QG P+ PPP SV P ++ P P S G +PP P PPG
Sbjct: 250 GMAQSGYQGQYPPV---PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPP-PPPG 305
Query: 417 VYPHPEGVTNATVNMQPSR 473
P P G+ PSR
Sbjct: 306 RTPGPPGMPGMPPPPPPSR 324
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.049
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +3
Query: 243 GIIMSTHQGPSAPLDDLPPPYSSVVGTTHYGFVAPALSN--PIPDSVGAYPPAKPFTPPG 416
G+ S +QG P+ PPP SV P ++ P P S G +PP P PPG
Sbjct: 260 GMAQSGYQGQYPPV---PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPP-PPPG 315
Query: 417 VYPHPEGVTNATVNMQPSR 473
P P G+ PSR
Sbjct: 316 RTPGPPGMPGMPPPPPPSR 334
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -3
Query: 442 VTPSGWG*TPGGVNGLAGGYAPTESGIGLLSAGATKP*CVVPTTDEYGGGRSSSGALG 269
V PSG G GG + GGYA SG G G + + GGG ++SG G
Sbjct: 183 VAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGG 240
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -3
Query: 442 VTPSGWG*TPGGVNGLAGGYAPTESGIGLLSAGATKP*CVVPTTDEYGGGRSSSGALG 269
V PSG G GG + GGYA SG G G + + GGG ++SG G
Sbjct: 183 VAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGG 240
>Z81460-1|CAB03830.2| 215|Caenorhabditis elegans Hypothetical
protein C04A11.1 protein.
Length = 215
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 273 SAPLDDLPPPYSSVVGTTHYGFVAPAL-SNPIPDSVGAYPPAKPFTPP 413
S P LPP Y S V H ++P + S+P+P S A P+ +PP
Sbjct: 157 SIPTIVLPPSYESSV--RHEAMLSPRIHSSPVPTSSNATAPSTSTSPP 202
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 252 MSTHQGPSAPLDDLPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
M+ H P P PP + + + G AP++ PIP ++ + PA PF P P P
Sbjct: 117 MNGHHAPPPPAVSRPPAFPTPPPSV--GSAAPSIQPPIPSALASARPA-PF--PAAQPPP 171
>U40413-2|AAK39174.1| 296|Caenorhabditis elegans Hypothetical
protein C18B2.4 protein.
Length = 296
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 288 DLPPPYSSVVGTTHY--GFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
D+PPPY + TT Y G P + +VGAY P +P P +P+P
Sbjct: 194 DMPPPYPGIGQTTPYPAGQFQP-VGTVQYQNVGAY-PGQPQQPGQYHPYP 241
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.80
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Frame = +3
Query: 255 STHQGP--SAPLDDLPPPYSSVVGTTHYGFVAPALSN-PIP------DSVGAYP-PAKPF 404
S Q P S LDD PPP + T VAP S P+P S+ A P PA P
Sbjct: 253 SRFQSPAISRTLDDAPPPPPRIASKTS---VAPTSSRAPLPPSSSFAPSISASPAPAPPP 309
Query: 405 TPP-GVYPHPEGVTNATVN 458
PP P+P + ATV+
Sbjct: 310 PPPQAASPYPGMKSTATVS 328
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 31.1 bits (67), Expect = 0.80
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Frame = +3
Query: 255 STHQGP--SAPLDDLPPPYSSVVGTTHYGFVAPALSN-PIP------DSVGAYP-PAKPF 404
S Q P S LDD PPP + T VAP S P+P S+ A P PA P
Sbjct: 255 SRFQSPAISRTLDDAPPPPPRIASKTS---VAPTSSRAPLPPSSSFAPSISASPAPAPPP 311
Query: 405 TPP-GVYPHPEGVTNATVN 458
PP P+P + ATV+
Sbjct: 312 PPPQAASPYPGMKSTATVS 330
>U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical
protein B0336.6 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 252 MSTHQGPSAPLDDLPPPYSSVVGTTHYGFVA 344
MS+ +DDLPPP SV G++ YG A
Sbjct: 357 MSSRMPTQDDMDDLPPPPESVGGSSAYGVFA 387
>AL132949-22|CAB70112.2| 603|Caenorhabditis elegans Hypothetical
protein Y53F4B.25 protein.
Length = 603
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 291 LPP-PYSSVVGTTHYGFVAPALSNPIPDSVGAYP---PAKPFTPPGVYPHPEGVTNATVN 458
LPP P S+V H V L +P+P + P PA+P+ P ++PH T
Sbjct: 191 LPPQPMSTVAPFKHNSPVRRQLVDPLPPLLQPSPVRFPAQPWQIPPLHPHQSTPNPLTQF 250
Query: 459 MQP 467
QP
Sbjct: 251 FQP 253
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +3
Query: 261 HQGPSAPLDDLPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
H PS P P P S ++ P+ S P + PPAKP P G Y P
Sbjct: 362 HPSPSYPSPSYPSP--SYPSPSYPSPSYPSPSYPAEPAYSVPPPAKPEQPSGGYDAP 416
>Z99280-2|CAE18017.1| 129|Caenorhabditis elegans Hypothetical
protein Y57G11B.6 protein.
Length = 129
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 270 PSAPLDDLPPPYSSVVGT 323
PSAP ++ PPPYSS+ T
Sbjct: 106 PSAPSEETPPPYSSIYPT 123
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 384 YPPAKPFTPPGVYPHPEG 437
YPP P+ PPG + +P G
Sbjct: 305 YPPGYPYPPPGAFYYPPG 322
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 345 PALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
P P+P G YPP P+ PPG YP+P
Sbjct: 287 PQYPYPVPPH-GYYPPGYPY-PPG-YPYP 312
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
R09E10.7 protein.
Length = 1717
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 279 PLDDLPPPYSSVVGTTHYGFVAPAL-SNPIPDSVGAYPPAKPFTPPGVYPHPEGVTNATV 455
P+ +LPP Y + + H AP L NP + + P T Y P + NA +
Sbjct: 1431 PIANLPPGYRNDISRLHQSHSAPQLGGNPAETNQEEHIPVVVPTANHQYMPPAQLGNALL 1490
Query: 456 N 458
N
Sbjct: 1491 N 1491
>U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical
protein C23H3.9a protein.
Length = 503
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 195 HLIEESVKLTKNFCC----TGIIMSTHQGPSAPLDDLPPPYSSVVGTTHYGFVAPALSNP 362
+L ++SVKL ++ CC GI+ + P+ P LP +S+V T AP S P
Sbjct: 113 YLCDQSVKLGRSICCKDTRRGIVPNGR--PARPTQRLPLTWSTVTPT-----AAP--SQP 163
Query: 363 IPDSVGAYPP 392
IP + P
Sbjct: 164 IPTATSRKAP 173
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +3
Query: 195 HLIEESVKLTKNFCC----TGIIMSTHQGPSAPLDDLPPPYSSVVGTTHYGFVAPALSNP 362
+L ++SVKL ++ CC GI+ + P+ P LP +S+V T AP S P
Sbjct: 109 YLCDQSVKLGRSICCKDTRRGIVPNGR--PARPTQRLPLTWSTVTPT-----AAP--SQP 159
Query: 363 IPDSVGAYPP 392
IP + P
Sbjct: 160 IPTATSRKAP 169
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 291 LPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
LPP + G Y + P S +P+ G+ P P PPG HP
Sbjct: 72 LPPRHG--YGQPRYVTIPPTNSYAVPEVGGSMPLICPEGPPGRPGHP 116
>AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical
protein Y37D8A.6 protein.
Length = 132
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 534 EPTTLTCFNCNKIVTTRVTYTTAW--HTHLIAGSICLITIVCSLCCLG 671
EP T C CN V TRV T + T L G ++C C G
Sbjct: 65 EPYTEFCPRCNTNVCTRVERTMGFCSWTMLFLGLFVFFPLLCCFCLDG 112
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 375 VGAYPPAKPFTPPGV-YPHPEGVTNATVNMQPS 470
VG PP P+TP G+ P P+ V +QP+
Sbjct: 394 VGDIPPNTPYTPAGMPQPQPQQQPPQMVQVQPN 426
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 348 ALSNPIPDSVGAYPPAKPFTPPGVYPHPEG 437
A NP GA P +P TPP P P G
Sbjct: 139 APGNPGASGKGAAAPCEPSTPPPCQPCPAG 168
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 279 PLDDLPPPYSSVVGTTHYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 431
P+ + PPP V + V + P P V PP +T P V P P
Sbjct: 163 PILEPPPPPPPVPPLSPLYKVLEIPATPSPIFVAPLPPPPAYTTPDVPPEP 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,901,050
Number of Sequences: 27780
Number of extensions: 314530
Number of successful extensions: 985
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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