Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m18
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                31   0.014
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.099
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 30.7 bits (66), Expect = 0.014
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 324 THYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPH 428
           +H+  ++ AL      S G YP    F PP  +PH
Sbjct: 285 SHHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPH 319


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 342  APALSNPIPDSVGAYP---PAKPFTPPGVYPHPEGV 440
            A A +N  P +    P   P KPFT PG  P P G+
Sbjct: 1109 AAAATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGI 1144


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 231 FCCTGIIMSTHQGPSAPLDDLPPPYSS 311
           +C   I++     P  P    PPP SS
Sbjct: 325 YCLVNIVLGDSDTPPKPAPPPPPPSSS 351


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 144 LHLSRFFHKTGSHSVFIHL-IEESVKLTKNFCCTGIIMSTHQGPSAPLDD 290
           L+ S F + T  +    +L +  +V  T +   +G++ +   GP+A +D+
Sbjct: 132 LNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASSGVVSAGECGPAADVDE 181


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 605 AHTFNCWVDLLDHYSLFTML 664
           +H  + WV+LL H++   ++
Sbjct: 152 SHQTDVWVELLKHFNYMKVI 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,298
Number of Sequences: 438
Number of extensions: 4249
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)