Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m08
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...   154   5e-38
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    41   0.001
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    30   1.4  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    29   3.3  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    29   3.3  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    29   3.3  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z48055-8|CAA88133.2|  379|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score =  154 bits (374), Expect = 5e-38
 Identities = 88/241 (36%), Positives = 147/241 (60%), Gaps = 22/241 (9%)
 Frame = +1

Query: 61  TIQYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLEITNCFPFPK 219
           +++++  D L VMKIVKH   E  + +     +   G L GLV   ++RLEITNCFP  +
Sbjct: 11  SVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVR 70

Query: 220 HDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQ 363
           ++  MD++     +Y+       LDM+R+ R +N+D+  VG+YQS   G   S  L+ES 
Sbjct: 71  NEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESM 130

Query: 364 YHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENL 543
           + YQ    E+VV+IYD  K+ +G L+L+A+RL+  A+ +  + D+ PE ++   + Y+N+
Sbjct: 131 FDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWRPELVKAAGLTYQNM 190

Query: 544 FIEVPIVIRNSPLTNIMISELT---EMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELN 714
           F E+PI+I++S L N+++SEL+       ++  ++  DLG+   LE  +R++M  VDELN
Sbjct: 191 FEELPIIIKSSYLNNVLMSELSLAKSCSSDKYSTRHFDLGSKKSLEKSVRAMMANVDELN 250

Query: 715 Q 717
           +
Sbjct: 251 K 251


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 133 SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHV 303
           +  E   G L+G   +  +++TNCF  P    +DD   ++++   M+  L++ + +   V
Sbjct: 32  TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPV 91

Query: 304 GWYQSADVGNFLSLSLLESQYHYQTSIEES 393
           GW+ +    +  S  L+   Y+ +   E S
Sbjct: 92  GWFLT--TSDITSSCLIYHDYYVRVITEAS 119


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = +1

Query: 376 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPEALRNLKIGYENLFI 549
           T+I ES    I+ T+ S    LTL + + TP A IA   E + TP+   ++ + ++   +
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534

Query: 550 EVPIVIRNSPLTNIMISELTEMIPEEEGS 636
            V ++     + NI   ++   +  + GS
Sbjct: 535 PVSMMSTTVNVENIKGEQIPVNVFFDSGS 563


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 291 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 139
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 291 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 139
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 291 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 139
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = +1

Query: 76   QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 213
            QCD  AV+K +K   EE CS      N+E +A+  G    +V ++ +++TNC  F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575


>Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 261 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 91
           H   V+LL    + +  W  V  +Q      T+ S+L    ++A FF+   +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


>Z48055-8|CAA88133.2|  379|Caenorhabditis elegans Hypothetical
           protein T07A5.1 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +1

Query: 49  ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 228
           EN+ +  Y+Q D      ++K+ +  S  N+ +     L L +  R EI  C     H +
Sbjct: 113 ENKTSNDYLQFDTQPARAVLKNFNTFSIGNLHIPSNIPLFLKMWERSEIRGCLNLIVHRN 172

Query: 229 TMDEEEY 249
               +++
Sbjct: 173 MTKSQQF 179


>AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 261 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 91
           H   V+LL    + +  W  V  +Q      T+ S+L    ++A FF+   +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,469
Number of Sequences: 27780
Number of extensions: 389750
Number of successful extensions: 1045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)