Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m07
         (641 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           139   6e-35
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    71   2e-14
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    40   9e-05
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   0.88 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   1.5  
DQ230893-2|ABD94312.1|  525|Anopheles gambiae iduronate 2-sulfat...    24   4.7  
AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    23   8.2  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  139 bits (337), Expect = 6e-35
 Identities = 72/171 (42%), Positives = 105/171 (61%)
 Frame = +2

Query: 80  QFRLILIGDSTVGKSSLLKYFTDGKFAELSDPTVGVDFFARIIEIQDGTRIKLQLWDTAG 259
           QF+L+L+G+S VGKSSL+  F  G+F E  + T+G  F  + + I D T +K ++WDTAG
Sbjct: 24  QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDD-TTVKFEIWDTAG 82

Query: 260 QERFRSITKSYYRNSVGALLVYDVSNRSSFEHIPLWMMEAKRHIEPHRPVFALVGCKLDL 439
           QER+ S+   YYR +  A++VYD+ N  SF     W+ E +R   P+  V AL G K DL
Sbjct: 83  QERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPN-IVIALAGNKADL 141

Query: 440 VGSDNKSESRREVSCEEARLFAEENGLHHIETSAKTGLNVEQAFVLVAQEV 592
             S       R V  EEA+ +A++N L  +ETSAKT +NV   F+ +A+++
Sbjct: 142 ANS-------RVVDYEEAKQYADDNRLLFMETSAKTAVNVNDIFLAIAKKL 185


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 71.3 bits (167), Expect = 2e-14
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
 Frame = +2

Query: 86  RLILIGDSTVGKSSLLKYFTDGKFAELSDPTVGVDFFARIIEIQDGTRIKLQLWDTAGQE 265
           + +++GD TVGK+ +L  +T   F     PT   ++ A ++   DG ++ L LWDTAGQE
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMVV--DGVQVSLGLWDTAGQE 65

Query: 266 RFRSITKSYYRNSVGALLVYDVSNRSSFEHI-PLWMMEAKRHIEPHRPVFALVGCKLDL 439
            +  +    Y  +   L+ Y V++ SSFE++   W  E K H  P  P+  LVG K+DL
Sbjct: 66  DYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPII-LVGTKIDL 122


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 39.5 bits (88), Expect = 9e-05
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
 Frame = +2

Query: 251 TAGQERFRSITKSYYRNSVGALLVYDVSNRSSFEHI-PLWMMEAKRHIEPHRPVFALVGC 427
           +AGQE +  +    Y  +   L+ + V + SSFE++   W+ E   H +  +  F LVG 
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGT 58

Query: 428 KLDLVGSDNKSE-----SRREVSCEEARLFAEE-NGLHHIETSAKT--GL-NVEQAFVLV 580
           ++DL   ++  E      ++ ++ E+    A+E   + ++E SA T  GL NV    +L 
Sbjct: 59  QIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDVAILA 118

Query: 581 AQEVYQP 601
           A E  +P
Sbjct: 119 ALEPPEP 125


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 146  DGKFAELSDPTVGVDFFARIIEIQDG 223
            DG+FA+      G+DF   +   QDG
Sbjct: 1768 DGRFAQHFSSIQGIDFLTNLFPTQDG 1793


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 146  DGKFAELSDPTVGVDFFARIIEIQDG 223
            DG FA+  +   G+DF   +   QDG
Sbjct: 1767 DGPFAQHFNSIQGIDFLTNLFPTQDG 1792


>DQ230893-2|ABD94312.1|  525|Anopheles gambiae iduronate 2-sulfatase
           precursor protein.
          Length = 525

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 279 MERNLSCPAVSQSCSLILVPSWISMILAKKSTPTVGSDSSANFPSVKY 136
           ++RNL CP   ++  L  +P   S   AK+   TVG  S   F +V Y
Sbjct: 174 LKRNLLCPVRLETQPLHTLPDIESTEEAKRFLSTVGM-SQPYFLAVGY 220


>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 47  IKKMVDPIFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEL 166
           +KK+V+P+F+ + +   IG +   K  L ++    K+  +
Sbjct: 30  VKKVVNPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRI 69


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,038
Number of Sequences: 2352
Number of extensions: 13591
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)