Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m07
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.12 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.12 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  IFDYQFRLILI--GDSTVGKSSLLKYFTDGKFAELSDPTVGVDFFARI 205
           +F Y    IL+  G +  G    LKY+     ++LSDP V +D   +I
Sbjct: 240 LFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQI 287


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 68  IFDYQFRLILI--GDSTVGKSSLLKYFTDGKFAELSDPTVGVDFFARI 205
           +F Y    IL+  G +  G    LKY+     ++LSDP V +D   +I
Sbjct: 293 LFPYALLTILLIRGLTLPGAMEGLKYYVTPNLSKLSDPEVWIDAVTQI 340


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 305 VGALLVYDVSNRSSFEHIPLWMMEAKRHIEPHRPVFALVGCKLDLVGS 448
           + AL++Y +  R S  H+    +E    I P  P   L+G  LDL GS
Sbjct: 20  IPALILYFIYFRISRRHL----LELAEKI-PGPPALPLIGNALDLFGS 62


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 234 LILVPSWISMILAKKSTP 181
           LI++ SW+S  L + +TP
Sbjct: 233 LIVIISWVSFWLNRNATP 250


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 234 LILVPSWISMILAKKSTP 181
           LI++ SW+S  L + +TP
Sbjct: 233 LIVIISWVSFWLNRNATP 250


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 234 LILVPSWISMILAKKSTP 181
           LI++ SW+S  L + +TP
Sbjct: 172 LIVIISWVSFWLNRNATP 189


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 506 EENGLHHIETSAKTGLNVEQ 565
           E+N L  + TS K+GLN+EQ
Sbjct: 435 EKNWLP-VHTSYKSGLNLEQ 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,885
Number of Sequences: 438
Number of extensions: 3409
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)