Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7m02
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    38   0.010
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256...    37   0.017
05_07_0298 + 29072111-29072169,29072281-29072518,29072660-290727...    34   0.093
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973...    28   6.1  
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634...    28   6.1  

>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 101 QSTGTGQGFKKCLCKKN-CATSRCLCFKNKVL*TSKCHSSLPCKNK*LYGLTK 256
           + T  G+G K C CKK+ C    C+CF +    +  C    PC NK ++G+ +
Sbjct: 106 RKTDEGEGCKSCSCKKSKCLKLYCVCFASGSHCSESCGCD-PCYNKSIHGVPR 157


>05_06_0026 -
           25024807-25025300,25025432-25025495,25025567-25025662,
           25025719-25025929,25026616-25026690,25026820-25027037
          Length = 385

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 98  LQSTGTGQGFKKCLCKKN-CATSRCLCFKNKVL*TSKCHSSLPCKNK*LYGLT 253
           ++ +  G G K C CKK+ C    C CF      + KC    PC NK LY  T
Sbjct: 76  VEESADGNGCKHCACKKSRCLKLYCPCFAGGGYCSEKC-GCQPCFNKALYAET 127


>05_07_0298 +
           29072111-29072169,29072281-29072518,29072660-29072740,
           29072831-29072897,29073055-29073191,29073319-29073321
          Length = 194

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 128 KKCLCKKN-CATSRCLCFKNKVL*TSKCHSSLPCKN 232
           K C C+K+ C+   C CFKN V  T+KC   L C N
Sbjct: 108 KGCSCRKSKCSKLYCECFKNSVGCTAKC-KCLECSN 142


>12_02_1038 -
           25596027-25596393,25596492-25596660,25597283-25597349,
           25597617-25597794,25599157-25599228,25599311-25599717,
           25600035-25600740,25600829-25600998,25601963-25602022,
           25602385-25602435
          Length = 748

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 110 GTGQGFKKCLCKKN-CATSRCLCFKNKVL*TSKCHSSLPCKN 232
           G G   K+C CKK+ C    C CF   V  +  C S   C N
Sbjct: 471 GDGTSCKRCSCKKSKCLKLYCECFHAGVFCSEPC-SCQGCLN 511


>05_07_0323 +
           29260608-29260836,29262242-29262513,29263349-29263487,
           29263581-29263714,29263847-29263970,29264364-29264773
          Length = 435

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 252 VSPYSYLFLQGKLEWHLEVHNTLFLKHRHL 163
           V   +Y  LQG  EW  E+H    LKH HL
Sbjct: 152 VKTLNYDGLQGHDEWVAEIHYLRNLKHPHL 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,437
Number of Sequences: 37544
Number of extensions: 225835
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)